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Items: 1 to 20 of 29

1.
Structures of the ribosome in intermediate states of ratcheting
Wen Zhang, Jack Dunkle, Jamie H. D. Cate
Science. Author manuscript; available in PMC 2010 Aug 10.
Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275
PMCID:
PMC2919209
AbstractArticlePDF–2.2M
2.
Regulation of the protein-conducting channel by a bound ribosome
James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten
Structure. Author manuscript; available in PMC 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010
PMCID:
PMC2778611
AbstractArticlePDF–3.1M
3.
Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks
John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley
Genomics. Author manuscript; available in PMC 2010 Jan 1.
Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001
PMCID:
PMC2633870
AbstractArticlePDF–1.9M
4.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
5.
RNA chaperone activity of L1 ribosomal proteins: phylogenetic conservation and splicing inhibition
Stefan L. Ameres, Dmitry Shcherbakov, Ekaterina Nikonova, Wolfgang Piendl, Renée Schroeder, Katharina Semrad
Nucleic Acids Res. 2007 Jun; 35(11): 3752–3763. Published online 2007 May 21. doi: 10.1093/nar/gkm318
PMCID:
PMC1920258
AbstractArticlePDF–6.6M
6.
Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12
Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui
J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06
PMCID:
PMC1797309
AbstractArticlePDF–141K
7.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
8.
Structural basis for mRNA and tRNA positioning on the ribosome
Veysel Berk, Wen Zhang, Raj D. Pai, Jamie H. D. Cate
Proc Natl Acad Sci U S A. 2006 Oct 24; 103(43): 15830–15834. Published online 2006 Oct 12. doi: 10.1073/pnas.0607541103
Correction in:
Proc Natl Acad Sci U S A. 2006 Dec 26; 103(52): 19931.
PMCID:
PMC1635088
AbstractArticlePDF–828K
9.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
10.
Conformation of 4.5S RNA in the signal recognition particle and on the 30S ribosomal subunit
SHAN-QING GU, JOHANNES JÖCKEL, PHILIPP BEINKER, JENS WARNECKE, YURI P. SEMENKOV, MARINA V. RODNINA, WOLFGANG WINTERMEYER
RNA. 2005 Sep; 11(9): 1374–1384. doi: 10.1261/rna.7219805
PMCID:
PMC1370821
AbstractArticlePDF–388K
11.
RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli
KATHARINA SEMRAD, RACHEL GREEN, RENÉE SCHROEDER
RNA. 2004 Dec; 10(12): 1855–1860. doi: 10.1261/rna.7121704
PMCID:
PMC1370674
AbstractArticlePDF–211K
12.
Magnesium ions mediate contacts between phosphoryl oxygens at positions 2122 and 2176 of the 23S rRNA and ribosomal protein L1.
D Drygin, R A Zimmermann
RNA. 2000 Dec; 6(12): 1714–1726. doi: 10.1017/s1355838200001436
PMCID:
PMC1370042
SummaryPDF–2.3M
13.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
14.
Translational regulation of the L11 ribosomal protein operon of Escherichia coli: analysis of the mRNA target site using oligonucleotide-directed mutagenesis.
G Baughman, M Nomura
Proc Natl Acad Sci U S A. 1984 Sep; 81(17): 5389–5393. doi: 10.1073/pnas.81.17.5389
PMCID:
PMC391709
SummaryPage BrowsePDF–1.3M
15.
Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli.
L E Post, G D Strycharz, M Nomura, H Lewis, P P Dennis
Proc Natl Acad Sci U S A. 1979 Apr; 76(4): 1697–1701. doi: 10.1073/pnas.76.4.1697
PMCID:
PMC383457
SummaryPage BrowsePDF–1.1M
16.
In vitro expression of Escherichia coli ribosomal protein genes: autogenous inhibition of translation.
J L Yates, A E Arfsten, M Nomura
Proc Natl Acad Sci U S A. 1980 Apr; 77(4): 1837–1841. doi: 10.1073/pnas.77.4.1837
PMCID:
PMC348603
SummaryPage BrowsePDF–1.5M
17.
Translational regulation of the L11 ribosomal protein operon of Escherichia coli: mutations that define the target site for repression by L1.
M S Thomas, M Nomura
Nucleic Acids Res. 1987 Apr 10; 15(7): 3085–3096. doi: 10.1093/nar/15.7.3085
PMCID:
PMC340717
SummaryPage BrowsePDF–950K
18.
Mutational analysis of the L1 binding site of 23S rRNA in Escherichia coli.
B Said, J R Cole, M Nomura
Nucleic Acids Res. 1988 Nov 25; 16(22): 10529–10545. doi: 10.1093/nar/16.22.10529
PMCID:
PMC338922
SummaryPage BrowsePDF–1.3M
19.
Ribosomal proteins S7 and L1 are located close to the decoding site of E. coli ribosome--affinity labeling studies with modified tRNAs carrying photoreactive probes attached adjacent to the 3'-end of the anticodon.
J Podkowiński, P Górnicki
Nucleic Acids Res. 1989 Nov 11; 17(21): 8767–8782. doi: 10.1093/nar/17.21.8767
PMCID:
PMC335042
SummaryPage BrowsePDF–1.0M
20.
Characterization of the Escherichia coli 23S Ribosomal RNA region associated with ribosomal protein L1. Evidence for homologies with the 5'-end region of the L11 operon.
C Branlant, A Krol, J P Ebel
Nucleic Acids Res. 1980 Dec 11; 8(23): 5567–5577. doi: 10.1093/nar/8.23.5567
PMCID:
PMC324326
SummaryPage BrowsePDF–1.1M

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