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Items: 1 to 20 of 80

1.
Structural basis for regulation of SOS response in bacteria
Bo Gao, Liang Liang, Lu Su, Aijia Wen, Chun Zhou, Yu Feng
Proc Natl Acad Sci U S A. 2023 Jan 10; 120(2): e2217493120. Published online 2023 Jan 4. doi: 10.1073/pnas.2217493120
PMCID:
PMC9926225
ArticlePDF–5.1M
2.
Tracking Escherichia coli DNA polymerase V to the entire genome during the SOS response
Mahmood Faraz, Roger Woodgate, Anders R. Clausen
DNA Repair (Amst) Author manuscript; available in PMC 2021 Jul 17.
Published in final edited form as: DNA Repair (Amst). 2021 May; 101: 103075. Published online 2021 Feb 19. doi: 10.1016/j.dnarep.2021.103075
PMCID:
PMC8286053
ArticlePDF–866K
3.
A Comprehensive View of Translesion Synthesis in Escherichia coli
Shingo Fujii, Robert P. Fuchs
Microbiol Mol Biol Rev. 2020 Sep; 84(3): e00002-20. Published online 2020 Jun 17. doi: 10.1128/MMBR.00002-20
PMCID:
PMC7307797
ArticlePDF–2.0M
4.
Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP
Malgorzata M. Jaszczur, Dan D. Vo, Ramunas Stanciauskas, Jeffrey G. Bertram, Adhirath Sikand, Michael M. Cox, Roger Woodgate, Chi H. Mak, Fabien Pinaud, Myron F. Goodman
PLoS Genet. 2019 Feb; 15(2): e1007956. Published online 2019 Feb 4. doi: 10.1371/journal.pgen.1007956
PMCID:
PMC6375631
ArticlePDF–4.5M
5.
Insights into the complex levels of regulation imposed on Escherichia coli DNA polymerase V
Myron F. Goodman, John P. McDonald, Malgorzata M. Jaszczur, Roger Woodgate
DNA Repair (Amst) Author manuscript; available in PMC 2017 Aug 1.
Published in final edited form as: DNA Repair (Amst). 2016 Aug; 44: 42–50. Published online 2016 May 13. doi: 10.1016/j.dnarep.2016.05.005
PMCID:
PMC4958523
ArticlePDF–653K
6.
A RecA Protein Surface Required for Activation of DNA Polymerase V
Angela J. Gruber, Aysen L. Erdem, Grzegorz Sabat, Kiyonobu Karata, Malgorzata M. Jaszczur, Dan D. Vo, Tayla M. Olsen, Roger Woodgate, Myron F. Goodman, Michael M. Cox
PLoS Genet. 2015 Mar; 11(3): e1005066. Published online 2015 Mar 26. doi: 10.1371/journal.pgen.1005066
PMCID:
PMC4374754
ArticlePDF–3.2M
7.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
ArticlePDF–1.1M
8.
DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase
Aysen L Erdem, Malgorzata Jaszczur, Jeffrey G Bertram, Roger Woodgate, Michael M Cox, Myron F Goodman
eLife. 2014; 3: e02384. Published online 2014 Apr 24. doi: 10.7554/eLife.02384
PMCID:
PMC4001326
ArticlePDF–1.5M
9.
Polymerase manager protein UmuD directly regulates Escherichia coli DNA polymerase III α binding to ssDNA
Kathy R. Chaurasiya, Clarissa Ruslie, Michelle C. Silva, Lukas Voortman, Philip Nevin, Samer Lone, Penny J. Beuning, Mark C. Williams
Nucleic Acids Res. 2013 Oct; 41(19): 8959–8968. Published online 2013 Jul 30. doi: 10.1093/nar/gkt648
PMCID:
PMC3799427
ArticlePDF–2.5M
10.
The Acinetobacter regulatory UmuDAb protein cleaves in response to DNA damage with chimeric LexA/UmuD characteristics
Janelle M. Hare, Sabal Adhikari, Kasandra V. Lambert, Alexander E. Hare, Alison N. Grice
FEMS Microbiol Lett. Author manuscript; available in PMC 2013 Sep 1.
Published in final edited form as: FEMS Microbiol Lett. 2012 Sep; 334(1): 57–65. Published online 2012 Jul 5. doi: 10.1111/j.1574-6968.2012.02618.x
PMCID:
PMC3475745
ArticlePDF–2.1M
11.
Selective disruption of the DNA polymerase III α–β complex by the umuD gene products
Michelle C. Silva, Philip Nevin, Erin A. Ronayne, Penny J. Beuning
Nucleic Acids Res. 2012 Jul; 40(12): 5511–5522. Published online 2012 Feb 9. doi: 10.1093/nar/gks229
PMCID:
PMC3384344
ArticlePDF–2.8M
12.
Characterization of Escherichia coli UmuC Active-Site Loops Identifies Variants That Confer UV Hypersensitivity
Lisa A. Hawver, Caitlin A. Gillooly, Penny J. Beuning
J Bacteriol. 2011 Oct; 193(19): 5400–5411. doi: 10.1128/JB.05301-11
PMCID:
PMC3187380
ArticlePDF–2.2M
13.
The Dimeric SOS Mutagenesis Protein UmuD Is Active as a Monomer
Jaylene N. Ollivierre, Jacquelyn L. Sikora, Penny J. Beuning
J Biol Chem. 2011 Feb 4; 286(5): 3607–3617. Published online 2010 Nov 29. doi: 10.1074/jbc.M110.167254
PMCID:
PMC3030365
ArticlePDF–2.2M
14.
Proteolysis in the SOS response and metal homeostasis in Escherichia coli
Mihaela Pruteanu, Tania A. Baker
Res Microbiol. Author manuscript; available in PMC 2010 Nov 1.
Published in final edited form as: Res Microbiol. 2009 Nov; 160(9): 677–683. Published online 2009 Sep 10. doi: 10.1016/j.resmic.2009.08.012
PMCID:
PMC2783568
ArticlePDF–341K
15.
Amino Acid Architecture That Influences dNTP Insertion Efficiency in Y-Family DNA Polymerase V of E. coli
Kwang Young Seo, Jun Yin, Prashant Donthamsetti, Sushil Chandani, Chui Hong Lee, Edward L. Loechler
J Mol Biol. Author manuscript; available in PMC 2010 Sep 18.
Published in final edited form as: J Mol Biol. 2009 Sep 18; 392(2): 270–282. Published online 2009 Jul 14. doi: 10.1016/j.jmb.2009.07.016
PMCID:
PMC2766551
ArticlePDF–1019K
16.
Characterization of Novel Alleles of the Escherichia coli umuDC Genes Identifies Additional Interaction Sites of UmuC with the Beta Clamp
Penny J. Beuning, Sarah Chan, Lauren S. Waters, Haripriya Addepalli, Jaylene N. Ollivierre, Graham C. Walker
J Bacteriol. 2009 Oct; 191(19): 5910–5920. Published online 2009 Jul 24. doi: 10.1128/JB.00292-09
PMCID:
PMC2747890
ArticlePDF–1.0M
17.
Biochemical basis for the essential genetic requirements of RecA and the β-clamp in Pol V activation
Shingo Fujii, Robert P. Fuchs
Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14825–14830. Published online 2009 Aug 19. doi: 10.1073/pnas.0905855106
PMCID:
PMC2736454
ArticlePDF–1.1M
18.
The active form of DNA polymerase V is UmuD'2C–RecA–ATP
Qingfei Jiang, Kiyonobu Karata, Roger Woodgate, Michael M. Cox, Myron F. Goodman
Nature. Author manuscript; available in PMC 2009 Aug 25.
Published in final edited form as: Nature. 2009 Jul 16; 460(7253): 359–363. doi: 10.1038/nature08178
PMCID:
PMC2731490
ArticlePDF–434K
19.
DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli
Elena Curti, John P McDonald, Samantha Mead, Roger Woodgate
Mol Microbiol. 2009 Jan; 71(2): 315–331. Published online 2008 Nov 20. doi: 10.1111/j.1365-2958.2008.06526.x
PMCID:
PMC2680738
ArticlePDF–1.0M
20.
Transcriptional Modulator NusA Interacts with Translesion DNA Polymerases in Escherichia coli
Susan E. Cohen, Veronica G. Godoy, Graham C. Walker
J Bacteriol. 2009 Jan; 191(2): 665–672. Published online 2008 Nov 7. doi: 10.1128/JB.00941-08
PMCID:
PMC2620803
ArticlePDF–872K

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