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Items: 1 to 20 of 68

1.
Bacterial DNA polymerases participate in oligonucleotide recombination
Xin-tian Li, Lynn C. Thomason, James A. Sawitzke, Nina Costantino, Donald L. Court
Mol Microbiol. Author manuscript; available in PMC 2020 Sep 29.
Published in final edited form as: Mol Microbiol. 2013 Jun; 88(5): 906–920. Published online 2013 May 2. doi: 10.1111/mmi.12231
PMCID:
PMC7523544
AbstractArticlePDF–2.1M
2.
Single‐molecule mechanochemical characterization of E. coli pol III core catalytic activity
M. Nabuan Naufer, David A. Murison, Ioulia Rouzina, Penny J. Beuning, Mark C. Williams
Protein Sci. 2017 Jul; 26(7): 1413–1426. Published online 2017 Mar 16. doi: 10.1002/pro.3152
PMCID:
PMC5477539
AbstractArticlePDF–756K
3.
Self-correcting mismatches during high-fidelity DNA replication
Rafael Fernandez-Leiro, Julian Conrad, Ji-Chun Yang, Stefan M. V. Freund, Sjors H. W. Scheres, Meindert H. Lamers
Nat Struct Mol Biol. Author manuscript; available in PMC 2017 Aug 1.
Published in final edited form as: Nat Struct Mol Biol. 2017 Feb; 24(2): 140–143. Published online 2017 Jan 9. doi: 10.1038/nsmb.3348
PMCID:
PMC5300136
AbstractArticlePDF–1.3M
4.
cryo-EM structures of the E. coli replicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease and τ
Rafael Fernandez-Leiro, Julian Conrad, Sjors HW Scheres, Meindert H Lamers
eLife. 2015; 4: e11134. Published online 2015 Oct 24. doi: 10.7554/eLife.11134
PMCID:
PMC4703070
AbstractArticlePDF–5.1M
5.
DNA Polymerase α Subunit Residues and Interactions Required for Efficient Initiation Complex Formation Identified by a Genetic Selection
Janet C. Lindow, Paul R. Dohrmann, Charles S. McHenry
J Biol Chem. 2015 Jul 3; 290(27): 16851–16860. Published online 2015 May 18. doi: 10.1074/jbc.M115.661090
PMCID:
PMC4505431
AbstractArticlePDF–1.6M
6.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
7.
Polymerase manager protein UmuD directly regulates Escherichia coli DNA polymerase III α binding to ssDNA
Kathy R. Chaurasiya, Clarissa Ruslie, Michelle C. Silva, Lukas Voortman, Philip Nevin, Samer Lone, Penny J. Beuning, Mark C. Williams
Nucleic Acids Res. 2013 Oct; 41(19): 8959–8968. Published online 2013 Jul 30. doi: 10.1093/nar/gkt648
PMCID:
PMC3799427
AbstractArticlePDF–2.5M
8.
Single-molecule studies reveal the function of a third polymerase in the replisome
Roxana E Georgescu, Isabel Kurth, Mike E O'Donnell
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 24.
Published in final edited form as: Nat Struct Mol Biol. 2011 Dec 11; 19(1): 113–116. Published online 2011 Dec 11. doi: 10.1038/nsmb.2179
PMCID:
PMC3721970
AbstractArticlePDF–1.0M
9.
A structural role for the PHP domain in E. coli DNA polymerase III
Tiago Barros, Joel Guenther, Brian Kelch, Jordan Anaya, Arjun Prabhakar, Mike O’Donnell, John Kuriyan, Meindert H Lamers
BMC Struct Biol. 2013; 13: 8. Published online 2013 May 14. doi: 10.1186/1472-6807-13-8
PMCID:
PMC3666897
AbstractArticlePDF–3.1M
10.
Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits α, ε, θ and β reveals a highly flexible arrangement of the proofreading domain
Kiyoshi Ozawa, Nicholas P. Horan, Andrew Robinson, Hiromasa Yagi, Flynn R. Hill, Slobodan Jergic, Zhi-Qiang Xu, Karin V. Loscha, Nan Li, Moeava Tehei, Aaron J. Oakley, Gottfried Otting, Thomas Huber, Nicholas E. Dixon
Nucleic Acids Res. 2013 May; 41(10): 5354–5367. Published online 2013 Apr 10. doi: 10.1093/nar/gkt162
PMCID:
PMC3664792
AbstractArticlePDF–6.3M
11.
Architecture of the Pol III–clamp–exonuclease complex reveals key roles of the exonuclease subunit in processive DNA synthesis and repair
Ana Toste Rêgo, Andrew N Holding, Helen Kent, Meindert H Lamers
EMBO J. 2013 May 2; 32(9): 1334–1343. Published online 2013 Apr 2. doi: 10.1038/emboj.2013.68
PMCID:
PMC3642679
AbstractArticlePDF–923K
12.
A direct proofreader–clamp interaction stabilizes the Pol III replicase in the polymerization mode
Slobodan Jergic, Nicholas P Horan, Mohamed M Elshenawy, Claire E Mason, Thitima Urathamakul, Kiyoshi Ozawa, Andrew Robinson, Joris M H Goudsmits, Yao Wang, Xuefeng Pan, Jennifer L Beck, Antoine M van Oijen, Thomas Huber, Samir M Hamdan, Nicholas E Dixon
EMBO J. 2013 May 2; 32(9): 1322–1333. Published online 2013 Feb 22. doi: 10.1038/emboj.2012.347
PMCID:
PMC3642676
AbstractArticlePDF–1.2M
13.
Escherichia coli DNA polymerase III is responsible for the high level of spontaneous mutations in mutT strains
Masami Yamada, Masatomi Shimizu, Atsushi Katafuchi, Petr Grúz, Shingo Fujii, Yukio Usui, Robert P Fuchs, Takehiko Nohmi
Mol Microbiol. 2012 Dec; 86(6): 1364–1375. Published online 2012 Nov 1. doi: 10.1111/mmi.12061
PMCID:
PMC3556519
AbstractArticlePDF–697K
14.
Studying protein complexes by the yeast two-hybrid system
Seesandra V. Rajagopala, Patricia Sikorski, J. Harry Caufield, Andrey Tovchigrechko, Peter Uetz
Methods. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Methods. 2012 Dec; 58(4): 392–399. Published online 2012 Jul 24. doi: 10.1016/j.ymeth.2012.07.015
PMCID:
PMC3517932
AbstractArticlePDF–2.4M
15.
Selective disruption of the DNA polymerase III α–β complex by the umuD gene products
Michelle C. Silva, Philip Nevin, Erin A. Ronayne, Penny J. Beuning
Nucleic Acids Res. 2012 Jul; 40(12): 5511–5522. Published online 2012 Feb 9. doi: 10.1093/nar/gks229
PMCID:
PMC3384344
AbstractArticlePDF–2.8M
16.
Differential effects of cisplatin and MNNG on dna mutants of Escherichia coli
Melissa A. Calmann, M.G. Marinus
Mutat Res. Author manuscript; available in PMC 2010 Aug 25.
Published in final edited form as: Mutat Res. 2005 Oct 15; 578(1-2): 406–416. doi: 10.1016/j.mrfmmm.2005.06.030
PMCID:
PMC2927670
AbstractArticlePDF–1.2M
17.
Spontaneous DNA breakage in single living Escherichia coli cells
Jeanine M Pennington, Susan M Rosenberg
Nat Genet. Author manuscript; available in PMC 2010 Apr 19.
Published in final edited form as: Nat Genet. 2007 Jun; 39(6): 797–802. Published online 2007 May 27. doi: 10.1038/ng2051
Correction in:
volume 39 on page 1174
PMCID:
PMC2856310
AbstractArticlePDF–1.6M
18.
Optical Tweezers Experiments Resolve Distinct Modes of DNA-Protein Binding
Micah J. McCauley, Mark C. Williams
Biopolymers. Author manuscript; available in PMC 2010 Apr 1.
Published in final edited form as: Biopolymers. 2009 Apr; 91(4): 265–282. doi: 10.1002/bip.21123
PMCID:
PMC2753391
AbstractArticlePDF–2.1M
19.
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili
PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096
PMCID:
PMC2672614
AbstractArticle
20.
Distinct Double- and Single-Stranded DNA Binding of E. coli Replicative DNA Polymerase III α Subunit
Micah J. McCauley, Leila Shokri, Jana Sefcikova, Česlovas Venclovas, Penny J. Beuning, Mark C. Williams
ACS Chem Biol. 2008 Sep 19; 3(9): 577–587. Published online 2008 Jul 25. doi: 10.1021/cb8001107
PMCID:
PMC2665888
AbstractArticlePDF–1.7M

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