PMC Links for GEO Profiles (Select 39798197) - PMC

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Items: 15

Select item 75442241.

Distinct oligomeric structures of the YoeB–YefM complex provide insights into the conditional cooperativity of type II toxin–antitoxin system

Lu Xue, Jian Yue, Jiyuan Ke, Muhammad Hidayatullah Khan, Wen Wen, Baolin Sun, Zhongliang Zhu, Liwen Niu

Nucleic Acids Res. 2020 Oct 9; 48(18): 10527–10541. Published online 2020 Aug 26. doi: 10.1093/nar/gkaa706

PMCID:: PMC7544224

Abstract Article PDF–6.0M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 27279473.

A Differential Effect of E. coli Toxin-Antitoxin Systems on Cell Death in Liquid Media and Biofilm Formation

Ilana Kolodkin-Gal, Reut Verdiger, Ayalla Shlosberg-Fedida, Hanna Engelberg-Kulka

PLoS One. 2009; 4(8): e6785. Published online 2009 Aug 26. doi: 10.1371/journal.pone.0006785

Correction in:: PLoS One. 2015; 10(10): e0140184.

PMCID:: PMC2727947

Abstract Article PDF–575K

Select item 26320734.

Influence of Operator Site Geometry on Transcriptional Control by the YefM-YoeB Toxin-Antitoxin Complex

Simon E. S. Bailey, Finbarr Hayes

J Bacteriol. 2009 Feb; 191(3): 762–772. Published online 2008 Nov 21. doi: 10.1128/JB.01331-08

PMCID:: PMC2632073

Abstract Article PDF–1000K

Select item 26320035.

Toxin-Antitoxin Systems in Escherichia coli Influence Biofilm Formation through YjgK (TabA) and Fimbriae

Younghoon Kim, Xiaoxue Wang, Qun Ma, Xue-Song Zhang, Thomas K. Wood

J Bacteriol. 2009 Feb; 191(4): 1258–1267. Published online 2008 Dec 5. doi: 10.1128/JB.01465-08

PMCID:: PMC2632003

Abstract Article PDF–809K

Select item 19518996.

What Is the Benefit to Escherichia coli of Having Multiple Toxin-Antitoxin Systems in Its Genome?

Virginie Tsilibaris, Geneviève Maenhaut-Michel, Natacha Mine, Laurence Van Melderen

J Bacteriol. 2007 Sep; 189(17): 6101–6108. Published online 2007 May 18. doi: 10.1128/JB.00527-07

PMCID:: PMC1951899

Abstract Article PDF–342K

Select item 18025617.

Toxin–antitoxin regulation: bimodal interaction of YefM–YoeB with paired DNA palindromes exerts transcriptional autorepression

Barbara Kędzierska, Lu-Yun Lian, Finbarr Hayes

Nucleic Acids Res. 2007 Jan; 35(1): 325–339. Published online 2006 Dec 14. doi: 10.1093/nar/gkl1028

PMCID:: PMC1802561

Abstract Article PDF–2.2M

Select item 17973508.

The yefM-yoeB Toxin-Antitoxin Systems of Escherichia coli and Streptococcus pneumoniae: Functional and Structural Correlation

Concha Nieto, Izhack Cherny, Seok Kooi Khoo, Mario García de Lacoba, Wai Ting Chan, Chew Chieng Yeo, Ehud Gazit, Manuel Espinosa

J Bacteriol. 2007 Feb; 189(4): 1266–1278. Published online 2006 Oct 27. doi: 10.1128/JB.01130-06

PMCID:: PMC1797350

Abstract Article PDF–483K

Select item 16814829.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148110.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 155740211.

Persisters: a distinct physiological state of E. coli

Devang Shah, Zhigang Zhang, Arkady Khodursky, Niilo Kaldalu, Kristi Kurg, Kim Lewis

BMC Microbiol. 2006; 6: 53. Published online 2006 Jun 12. doi: 10.1186/1471-2180-6-53

PMCID:: PMC1557402

Abstract Article PDF–612K

Select item 132520012.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405