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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 102502264.

Not4-dependent targeting of MMF1 mRNA to mitochondria limits its expression via ribosome pausing, Egd1 ubiquitination, Caf130, no-go-decay and autophagy

Siyu Chen, George Allen, Olesya O Panasenko, Martine A Collart

Nucleic Acids Res. 2023 Jun 9; 51(10): 5022–5039. Published online 2023 Apr 24. doi: 10.1093/nar/gkad299

PMCID:: PMC10250226

Abstract Article PDF–3.6M

Select item 102350865.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 99403516.

Not1 and Not4 inversely determine mRNA solubility that sets the dynamics of co-translational events

George Allen, Benjamin Weiss, Olesya O. Panasenko, Susanne Huch, Zoltan Villanyi, Benjamin Albert, Daniel Dilg, Marina Zagatti, Paul Schaughency, Susan E. Liao, Jeff Corden, Christine Polte, David Shore, Zoya Ignatova, Vicent Pelechano, Martine A. Collart

Genome Biol. 2023; 24: 30. Published online 2023 Feb 20. doi: 10.1186/s13059-023-02871-7

PMCID:: PMC9940351

Abstract Article PDF–4.1M

Select item 98363487.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 96380288.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 96309869.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 928602310.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 920981111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 897058812.

Dedicated chaperones coordinate co-translational regulation of ribosomal protein production with ribosome assembly to preserve proteostasis

Benjamin Pillet, Alfonso Méndez-Godoy, Guillaume Murat, Sébastien Favre, Michael Stumpe, Laurent Falquet, Dieter Kressler

eLife. 2022; 11: e74255. Published online 2022 Mar 31. doi: 10.7554/eLife.74255

PMCID:: PMC8970588

Abstract Article PDF–5.6M

Select item 866360713.

The Ccr4-Not complex monitors the translating ribosome for codon optimality

Robert Buschauer, Yoshitaka Matsuo, Takato Sugiyama, Ying-Hsin Chen, Najwa Alhusaini, Thomas Sweet, Ken Ikeuchi, Jingdong Cheng, Yasuko Matsuki, Risa Nobuta, Andrea Gilmozzi, Otto Berninghausen, Petr Tesina, Thomas Becker, Jeff Coller, Toshifumi Inada, Roland Beckmann

Science. Author manuscript; available in PMC 2021 Dec 10.

Published in final edited form as: Science. 2020 Apr 17; 368(6488): eaay6912. doi: 10.1126/science.aay6912

PMCID:: PMC8663607

Abstract Article PDF–3.1M

Select item 837088714.

The C-terminal region of yeast ubiquitin–protein ligase Not4 mediates its cellular localization and stress response

Vanessa Palermo, Mariarita Stirpe, Michele Maria Bianchi, Teresa Rinaldi, Angela Cirigliano, Antonella Ragnini-Wilson, Claudio Falcone, Cristina Mazzoni

FEMS Microbiol Lett. 2021 Aug; 368(15): fnab097. Published online 2021 Aug 2. doi: 10.1093/femsle/fnab097

Correction in:: FEMS Microbiol Lett. 2021 Sep; 368(18): fnab122.

PMCID:: PMC8370887

Abstract Article PDF–2.6M

Select item 813407815.

Conserved proline residues in the coiled coil–OB domain linkers of Rpt proteins facilitate eukaryotic proteasome base assembly

Chin Leng Cheng, Michael K. Wong, Yanjie Li, Mark Hochstrasser

J Biol Chem. 2021 Jan-Jun; 296: 100660. Published online 2021 Apr 14. doi: 10.1016/j.jbc.2021.100660

PMCID:: PMC8134078

Abstract Article PDF–5.1M

Select item 806308516.

MutSα mismatch repair protein stability is governed by subunit interaction, acetylation, and ubiquitination

Tim Arlow, Junwon Kim, Joanna E. Haye-Bertolozzi, Cristina Balbás Martínez, Caitlin Fay, Emma Zorensky, Mark D. Rose, Alison E. Gammie

G3 (Bethesda) 2021 Mar; 11(3): jkaa065. Published online 2021 Jan 8. doi: 10.1093/g3journal/jkaa065

PMCID:: PMC8063085

Abstract Article PDF–1.2M

Select item 787948217.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 766150418.

Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome

Yasuko Matsuki, Yoshitaka Matsuo, Yu Nakano, Shintaro Iwasaki, Hideyuki Yoko, Tsuyoshi Udagawa, Sihan Li, Yasushi Saeki, Tohru Yoshihisa, Keiji Tanaka, Nicholas T. Ingolia, Toshifumi Inada

Sci Rep. 2020; 10: 19669. Published online 2020 Nov 12. doi: 10.1038/s41598-020-76239-3

PMCID:: PMC7661504

Abstract Article PDF–6.3M

Select item 765233319.

Exploring the Complexity of Protein-Level Dosage Compensation that Fine-Tunes Stoichiometry of Multiprotein Complexes

Koji Ishikawa, Akari Ishihara, Hisao Moriya

PLoS Genet. 2020 Oct; 16(10): e1009091. Published online 2020 Oct 28. doi: 10.1371/journal.pgen.1009091

PMCID:: PMC7652333

Abstract Article PDF–3.2M

Select item 738643320.

Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell

Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone

Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.

Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855

PMCID:: PMC7386433

Abstract Article PDF–1.0M

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