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Items: 1 to 20 of 46

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Structure of the NuA4 histone acetyltransferase complex
Liting Ji, Lixia Zhao, Ke Xu, Huihan Gao, Yang Zhou, Roger D. Kornberg, Heqiao Zhang
Proc Natl Acad Sci U S A. 2022 Nov 29; 119(48): e2214313119. Published online 2022 Nov 22. doi: 10.1073/pnas.2214313119
PMCID:
PMC9860254
AbstractArticlePDF–3.6M
4.
Biochemical Characterization of the TINTIN Module of the NuA4 Complex Reveals Allosteric Regulation of Nucleosome Interaction
Udit Dalwadi, Elaina Corrado, Kaelin D. Fleming, Brandon E. Moeller, Sung-Eun Nam, John E. Burke, Calvin K. Yip
Mol Cell Biol. 2022 Nov; 42(11): e00170-22. Published online 2022 Oct 3. doi: 10.1128/mcb.00170-22
PMCID:
PMC9670870
AbstractArticlePDF–2.1M
5.
Structure and flexibility of the yeast NuA4 histone acetyltransferase complex
Stefan A Zukin, Matthew R Marunde, Irina K Popova, Katarzyna M Soczek, Eva Nogales, Avinash B Patel
eLife. 2022; 11: e81400. Published online 2022 Oct 20. doi: 10.7554/eLife.81400
PMCID:
PMC9643008
AbstractArticlePDF–12M
6.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
Interaction of replication factor Sld3 and histone acetyl transferase Esa1 alleviates gene silencing and promotes the activation of late and dormant replication origins
Seiji Tanaka
Genetics. 2021 Jan; 217(1): iyaa001. Published online 2020 Nov 11. doi: 10.1093/genetics/iyaa001
PMCID:
PMC8045687
AbstractArticlePDF–873K
9.
Phospho-dependent recruitment of the yeast NuA4 acetyltransferase complex by MRX at DNA breaks regulates RPA dynamics during resection
Xue Cheng, Olivier Jobin-Robitaille, Pierre Billon, Rémi Buisson, Hengyao Niu, Nicolas Lacoste, Nebiyu Abshiru, Valérie Côté, Pierre Thibault, Stephen J. Kron, Patrick Sung, Christopher J. Brandl, Jean-Yves Masson, Jacques Côté
Proc Natl Acad Sci U S A. 2018 Oct 2; 115(40): 10028–10033. Published online 2018 Sep 17. doi: 10.1073/pnas.1806513115
PMCID:
PMC6176631
AbstractArticlePDF–1.1M
10.
Molecular Architecture of the Essential Yeast Histone Acetyltransferase Complex NuA4 Redefines Its Multimodularity
Dheva Setiaputra, Salar Ahmad, Udit Dalwadi, Anne-Lise Steunou, Shan Lu, James D. Ross, Meng-Qiu Dong, Jacques Côté, Calvin K. Yip
Mol Cell Biol. 2018 May 1; 38(9): e00570-17. Prepublished online 2018 Feb 20. Published online 2018 Apr 16. doi: 10.1128/MCB.00570-17
PMCID:
PMC5902594
AbstractArticlePDF–3.8M
11.
Architecture of the Saccharomyces cerevisiae NuA4/TIP60 complex
Xuejuan Wang, Salar Ahmad, Zhihui Zhang, Jacques Côté, Gang Cai
Nat Commun. 2018; 9: 1147. Published online 2018 Mar 20. doi: 10.1038/s41467-018-03504-5
PMCID:
PMC5861120
AbstractArticlePDF–3.1M
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
15.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
16.
Combined Action of Histone Reader Modules Regulates NuA4 Local Acetyltransferase Function but Not Its Recruitment on the Genome
Anne-Lise Steunou, Myriam Cramet, Dorine Rossetto, Maria J. Aristizabal, Nicolas Lacoste, Simon Drouin, Valérie Côté, Eric Paquet, Rhea T. Utley, Nevan Krogan, François Robert, Michael S. Kobor, Jacques Côté
Mol Cell Biol. 2016 Nov 15; 36(22): 2768–2781. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00112-16
PMCID:
PMC5086519
AbstractArticlePDF–2.3M
17.
The Eaf3/5/7 Subcomplex Stimulates NuA4 Interaction with Methylated Histone H3 Lys-36 and RNA Polymerase II
Anish Sathianathan, Priyadarshini Ravichandran, Jake M. Lippi, Leah Cohen, Angelo Messina, Sherwin Shaju, Marci J. Swede, Daniel S. Ginsburg
J Biol Chem. 2016 Sep 30; 291(40): 21195–21207. Published online 2016 Aug 17. doi: 10.1074/jbc.M116.718742
PMCID:
PMC5076527
AbstractArticlePDF–1.6M
18.
Regulation of Antisense Transcription by NuA4 Histone Acetyltransferase and Other Chromatin Regulatory Factors
Bhawana Uprety, Amala Kaja, Jannatul Ferdoush, Rwik Sen, Sukesh R. Bhaumik
Mol Cell Biol. 2016 Mar 15; 36(6): 992–1006. Prepublished online 2016 Jan 11. Published online 2016 Mar 1. doi: 10.1128/MCB.00808-15
PMCID:
PMC4810466
AbstractArticlePDF–2.8M
19.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
20.
Eaf5/7/3 form a functionally independent NuA4 submodule linked to RNA polymerase II-coupled nucleosome recycling
Dorine Rossetto, Myriam Cramet, Alice Y Wang, Anne-Lise Steunou, Nicolas Lacoste, Julia M Schulze, Valérie Côté, Julie Monnet-Saksouk, Sandra Piquet, Amine Nourani, Michael S Kobor, Jacques Côté
EMBO J. 2014 Jun 17; 33(12): 1397–1415. Published online 2014 May 19. doi: 10.15252/embj.201386433
PMCID:
PMC4194127
AbstractArticlePDF–2.4M

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