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Select item 45695231.

Folding optimization in vivo uncovers new chaperones

Christopher W Lennon, Maike Thamsen, Elias T Friman, Austin Cacciaglia, Veronika Sachsenhauser, Frieda A Sorgenfrei, Milena A Wasik, James CA Bardwell

J Mol Biol. Author manuscript; available in PMC 2016 Sep 11.

Published in final edited form as: J Mol Biol. 2015 Sep 11; 427(18): 2983–2994. Published online 2015 May 21. doi: 10.1016/j.jmb.2015.05.013

PMCID:: PMC4569523

Abstract Article PDF–908K

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 40548403.

Inferring gene function from evolutionary change in signatures of translation efficiency

Anita Krisko, Tea Copic, Toni Gabaldón, Ben Lehner, Fran Supek

Genome Biol. 2014; 15(3): R44. Published online 2014 Mar 3. doi: 10.1186/gb-2014-15-3-r44

PMCID:: PMC4054840

Abstract Article PDF–2.2M

Select item 28579984.

Energetics-Based Protein Profiling on a Proteomic Scale: Identification of Proteins Resistant to Proteolysis

Chiwook Park, Sharleen Zhou, Jacqueline Gilmore, Susan Marqusee

J Mol Biol. Author manuscript; available in PMC 2010 Apr 21.

Published in final edited form as: J Mol Biol. 2007 May 18; 368(5): 1426–1437. Published online 2007 Mar 7. doi: 10.1016/j.jmb.2007.02.091

PMCID:: PMC2857998

Abstract Article PDF–2.6M

Select item 28126655.

Toxins Hha and CspD and Small RNA Regulator Hfq Are Involved in Persister Cell Formation Through MqsR in Escherichia coli

Younghoon Kim, Thomas K. Wood

Biochem Biophys Res Commun. Author manuscript; available in PMC 2011 Jan 1.

Published in final edited form as: Biochem Biophys Res Commun. 2010 Jan 1; 391(1): 209–213. Published online 2009 Nov 10. doi: 10.1016/j.bbrc.2009.11.033

PMCID:: PMC2812665

Abstract Article PDF–645K

Select item 24488146.

Quantifying changes in the thiol redox proteome upon oxidative stress in vivo

Lars I. Leichert, Florian Gehrke, Harini V. Gudiseva, Tom Blackwell, Marianne Ilbert, Angela K. Walker, John R. Strahler, Philip C. Andrews, Ursula Jakob

Proc Natl Acad Sci U S A. 2008 Jun 17; 105(24): 8197–8202. Published online 2008 Feb 14. doi: 10.1073/pnas.0707723105

PMCID:: PMC2448814

Abstract Article PDF–628K

Select item 22918027.

Time-dependent Translational Response of E. coli to Excess Zn(II)

J. Allen Easton, Peter Thompson, Michael W. Crowder

J Biomol Tech. 2006 Dec; 17(5): 303–307.

PMCID:: PMC2291802

Abstract Article PDF–238K

Select item 16814818.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 14570529.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520010.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405