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Items: 1 to 20 of 38

1.
Uncovering a delicate balance between endonuclease RNase III and ribosomal protein S15 in E. coli ribosome assembly
Anusha Naganathan, Roxanne Keltz, Hiram Lyon, Gloria M. Culver
Biochimie. Author manuscript; available in PMC 2022 Dec 1.
Published in final edited form as: Biochimie. 2021 Dec; 191: 104–117. Published online 2021 Sep 8. doi: 10.1016/j.biochi.2021.09.003
PMCID:
PMC8627457
ArticlePDF–1.0M
2.
Promoter activity and transcript mapping in the regulatory region for genes encoding ribosomal protein S15 and polynucleotide phosphorylase of Escherichia coli
Sylvia Evans, Patrick P. Dennis
Gene. Author manuscript; available in PMC 2017 Sep 6.
Published in final edited form as: Gene. 1985; 40(1): 15–22. doi: 10.1016/0378-1119(85)90019-8
PMCID:
PMC5586532
ArticlePDF–750K
3.
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck
Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473
PMCID:
PMC5454533
ArticlePDF–1.5M
4.
Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation
Nathalie Mathy, Olivier Pellegrini, Alexander Serganov, Dinshaw J. Patel, Chantal Ehresmann, Claude Portier
Mol Microbiol. Author manuscript; available in PMC 2015 Dec 29.
Published in final edited form as: Mol Microbiol. 2004 May; 52(3): 661–675. doi: 10.1111/j.1365-2958.2004.04005.x
PMCID:
PMC4693643
ArticlePDF–2.7M
5.
Structures of the ribosome in intermediate states of ratcheting
Wen Zhang, Jack Dunkle, Jamie H. D. Cate
Science. Author manuscript; available in PMC 2010 Aug 10.
Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275
PMCID:
PMC2919209
ArticlePDF–2.2M
6.
Regulation of the protein-conducting channel by a bound ribosome
James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten
Structure. Author manuscript; available in PMC 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010
PMCID:
PMC2778611
ArticlePDF–3.1M
7.
Concurrent Nucleation of 16S Folding and Induced Fit in 30 S Ribosome Assembly
Tadepalli Adilakshmi, Deepti L. Bellur, Sarah A. Woodson
Nature. Author manuscript; available in PMC 2009 Oct 30.
Published in final edited form as: Nature. 2008 Oct 30; 455(7217): 1268–1272. Published online 2008 Sep 10. doi: 10.1038/nature07298
PMCID:
PMC2720798
ArticlePDF–1.0M
8.
The poly(A)-dependent degradation pathway of rpsO mRNA is primarily mediated by RNase R
José M. Andrade, Eliane Hajnsdorf, Philippe Régnier, Cecília M. Arraiano
RNA. 2009 Feb; 15(2): 316–326. doi: 10.1261/rna.1197309
PMCID:
PMC2648712
ArticlePDF–887K
9.
Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks
John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley
Genomics. Author manuscript; available in PMC 2010 Jan 1.
Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001
PMCID:
PMC2633870
ArticlePDF–1.9M
10.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
ArticlePDF–1.0M
11.
Essentiality of Ribosomal and Transcription Antitermination Proteins Analyzed by Systematic Gene Replacement in Escherichia coli
Mikhail Bubunenko, Teresa Baker, Donald L. Court
J Bacteriol. 2007 Apr; 189(7): 2844–2853. Published online 2007 Feb 2. doi: 10.1128/JB.01713-06
PMCID:
PMC1855809
ArticlePDF–198K
12.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
ArticlePDF–141K
13.
30S ribosomal subunits can be assembled in vivo without primary binding ribosomal protein S15
Mikhail Bubunenko, Alexey Korepanov, Donald L. Court, Indu Jagannathan, Daniel Dickinson, Biswajoy Roy Chaudhuri, Maria B. Garber, Gloria M. Culver
RNA. 2006 Jul; 12(7): 1229–1239. doi: 10.1261/rna.2262106
PMCID:
PMC1484426
ArticlePDF–596K
14.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
ArticlePDF–204K
15.
Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli.
F Braun, J Le Derout, P Régnier
EMBO J. 1998 Aug 17; 17(16): 4790–4797. doi: 10.1093/emboj/17.16.4790
PMCID:
PMC1170808
SummaryPDF–298K
16.
In vivo evidence that the nusA and infB genes of E. coli are part of the same multi-gene operon which encodes at least four proteins.
Y Nakamura, S Mizusawa
EMBO J. 1985 Feb; 4(2): 527–532. doi: 10.1002/j.1460-2075.1985.tb03660.x
PMCID:
PMC554217
ArticlePDF–1.5M
17.
A novel GTPase activated by the small subunit of ribosome
Hyouta Himeno, Kyoko Hanawa-Suetsugu, Takatsugu Kimura, Kuniaki Takagi, Wakana Sugiyama, Shinobu Shirata, Tomoyuki Mikami, Fujiko Odagiri, Yukiko Osanai, Daisuke Watanabe, Simon Goto, Liliya Kalachnyuk, Chisato Ushida, Akira Muto
Nucleic Acids Res. 2004; 32(17): 5303–5309. Published online 2004 Oct 5. doi: 10.1093/nar/gkh861
PMCID:
PMC521671
ArticlePDF–261K
18.
The rpsO mRNA of Escherichia coli is polyadenylated at multiple sites resulting from endonucleolytic processing and exonucleolytic degradation.
J Haugel-Nielsen, E Hajnsdorf, P Regnier
EMBO J. 1996 Jun 17; 15(12): 3144–3152.
PMCID:
PMC450257
ArticlePDF–1.8M
19.
Location of Ribosomal Protein Binding Sites on 16S Ribosomal RNA
Robert A. Zimmermann, Akira Muto, Peter Fellner, Chantal Ehresmann, Christiane Branlant
Proc Natl Acad Sci U S A. 1972 May; 69(5): 1282–1286. doi: 10.1073/pnas.69.5.1282
PMCID:
PMC426682
ArticlePDF–981K
20.
Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant.
E Hajnsdorf, O Steier, L Coscoy, L Teysset, P Régnier
EMBO J. 1994 Jul 15; 13(14): 3368–3377. doi: 10.1002/j.1460-2075.1994.tb06639.x
PMCID:
PMC395234
ArticlePDF–2.3M

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