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Select item 50526181.

Activation of Xer-recombination at dif: structural basis of the FtsKγ–XerD interaction

Andrew N. Keller, Yue Xin, Stephanie Boer, Jonathan Reinhardt, Rachel Baker, Lidia K. Arciszewska, Peter J. Lewis, David J. Sherratt, Jan Löwe, Ian Grainge

Sci Rep. 2016; 6: 33357. Published online 2016 Oct 6. doi: 10.1038/srep33357

PMCID:: PMC5052618

Abstract Article PDF–1.5M

Select item 48651072.

Mapping Topoisomerase IV Binding and Activity Sites on the E. coli Genome

Hafez El Sayyed, Ludovic Le Chat, Elise Lebailly, Elise Vickridge, Carine Pages, Francois Cornet, Marco Cosentino Lagomarsino, Olivier Espéli

PLoS Genet. 2016 May; 12(5): e1006025. Published online 2016 May 12. doi: 10.1371/journal.pgen.1006025

PMCID:: PMC4865107

Abstract Article PDF–6.3M

Select item 45771733.

Assembly, translocation, and activation of XerCD-dif recombination by FtsK translocase analyzed in real-time by FRET and two-color tethered fluorophore motion

Peter F. J. May, Pawel Zawadzki, David J. Sherratt, Achillefs N. Kapanidis, Lidia K. Arciszewska

Proc Natl Acad Sci U S A. 2015 Sep 15; 112(37): E5133–E5141. Published online 2015 Aug 31. doi: 10.1073/pnas.1510814112

PMCID:: PMC4577173

Abstract Article PDF–2.0M

Select item 41238554.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 38086675.

Conformational transitions during FtsK translocase activation of individual XerCD–dif recombination complexes

Pawel Zawadzki, Peter F. J. May, Rachel A. Baker, Justin N. M. Pinkney, Achillefs N. Kapanidis, David J. Sherratt, Lidia K. Arciszewska

Proc Natl Acad Sci U S A. 2013 Oct 22; 110(43): 17302–17307. Published online 2013 Oct 7. doi: 10.1073/pnas.1311065110

PMCID:: PMC3808667

Abstract Article PDF–1.5M

Select item 28002176.

FtsK translocation on DNA stops at XerCD-dif

James E. Graham, Viknesh Sivanathan, David J. Sherratt, Lidia K. Arciszewska

Nucleic Acids Res. 2010 Jan; 38(1): 72–81. Published online 2009 Oct 23. doi: 10.1093/nar/gkp843

PMCID:: PMC2800217

Abstract Article PDF–1.1M

Select item 27311677.

The dif/Xer Recombination Systems in Proteobacteria

Christophe Carnoy, Claude-Alain Roten

PLoS One. 2009; 4(9): e6531. Published online 2009 Sep 3. doi: 10.1371/journal.pone.0006531

PMCID:: PMC2731167

Abstract Article PDF–586K

Select item 26734428.

Asymmetric DNA requirements in Xer recombination activation by FtsK

Laetitia Bonné, Sarah Bigot, Fabien Chevalier, Jean-François Allemand, François-Xavier Barre

Nucleic Acids Res. 2009 Apr; 37(7): 2371–2380. Published online 2009 Feb 26. doi: 10.1093/nar/gkp104

PMCID:: PMC2673442

Abstract Article PDF–405K

Select item 25195339.

Synthetic Lethality with the dut Defect in Escherichia coli Reveals Layers of DNA Damage of Increasing Complexity Due to Uracil Incorporation

Helen Ting, Elena A. Kouzminova, Andrei Kuzminov

J Bacteriol. 2008 Sep; 190(17): 5841–5854. Published online 2008 Jun 27. doi: 10.1128/JB.00711-08

PMCID:: PMC2519533

Abstract Article PDF–1.1M

Select item 179730910.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 168148111.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 152207412.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 148289313.

Genomic and Functional Analysis of the IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Its Transposon Tn4655 Suggests Catabolic Gene Spread by a Tyrosine Recombinase

Masahiro Sota, Hirokazu Yano, Akira Ono, Ryo Miyazaki, Hidenori Ishii, Hiroyuki Genka, Eva M. Top, Masataka Tsuda

J Bacteriol. 2006 Jun; 188(11): 4057–4067. doi: 10.1128/JB.00185-06

PMCID:: PMC1482893

Abstract Article PDF–728K

Select item 144905114.

An Efficient Method of Selectable Marker Gene Excision by Xer Recombination for Gene Replacement in Bacterial Chromosomes

Alexandra E. Bloor, Rocky M. Cranenburgh

Appl Environ Microbiol. 2006 Apr; 72(4): 2520–2525. doi: 10.1128/AEM.72.4.2520-2525.2006

PMCID:: PMC1449051

Abstract Article PDF–148K

Select item 141358315.

Dissection of a functional interaction between the DNA translocase, FtsK, and the XerD recombinase

James Yates, Ivailo Zhekov, Rachel Baker, Bjørn Eklund, David J Sherratt, Lidia K Arciszewska

Mol Microbiol. 2006 Mar; 59(6): 1754–1766. Published online 2006 Jan 25. doi: 10.1111/j.1365-2958.2005.05033.x

PMCID:: PMC1413583

Abstract Article PDF–341K

Select item 132520016.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405