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Items: 10

1.
The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes
Yufeng Zhai, Milton H. Saier, JR.
Protein Sci. 2002 Sep; 11(9): 2196–2207. doi: 10.1110/ps.0209002
PMCID:
PMC2373602
ArticlePDF–158K
2.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
ArticlePDF–141K
3.
Salmonella Produces an O-Antigen Capsule Regulated by AgfD and Important for Environmental Persistence
D. L. Gibson, A. P. White, S. D. Snyder, S. Martin, C. Heiss, P. Azadi, M. Surette, W. W. Kay
J Bacteriol. 2006 Nov; 188(22): 7722–7730. doi: 10.1128/JB.00809-06
PMCID:
PMC1636306
ArticlePDF–327K
4.
TCDB: the Transporter Classification Database for membrane transport protein analyses and information
Milton H. Saier, Jr, Can V. Tran, Ravi D. Barabote
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D181–D186. Published online 2005 Dec 28. doi: 10.1093/nar/gkj001
PMCID:
PMC1334385
ArticlePDF–550K
5.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
ArticlePDF–204K
6.
BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria
Frode S. Berven, Kristian Flikka, Harald B. Jensen, Ingvar Eidhammer
Nucleic Acids Res. 2004 Jul 1; 32(Web Server issue): W394–W399. doi: 10.1093/nar/gkh351
PMCID:
PMC441489
ArticlePDF–105K
7.
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
G Plunkett, 3rd, V Burland, D L Daniels, F R Blattner
Nucleic Acids Res. 1993 Jul 25; 21(15): 3391–3398. doi: 10.1093/nar/21.15.3391
PMCID:
PMC331436
ArticlePDF–1.4M
8.
Protein folding in the periplasm in the absence of primary oxidant DsbA: modulation of redox potential in periplasmic space via OmpL porin
Claire Dartigalongue, Hiroshi Nikaido, Satish Raina
EMBO J. 2000 Nov 15; 19(22): 5980–5988. doi: 10.1093/emboj/19.22.5980
Correction in:
EMBO J. 2004 Sep 29; 23(19): 3907.
PMCID:
PMC305838
ArticlePDF–305K
9.
The OmpL porin does not modulate redox potential in the periplasmic space of Escherichia coli
Abhijit A. Sardesai, Pierre Genevaux, Françoise Schwager, Debbie Ang, Costa Georgopoulos
EMBO J. 2003 Apr 1; 22(7): 1461–1466. doi: 10.1093/emboj/cdg152
PMCID:
PMC152896
ArticlePDF–129K
10.
A functional update of the Escherichia coli K-12 genome
Margrethe H Serres, Shuba Gopal, Laila A Nahum, Ping Liang, Terry Gaasterland, Monica Riley
Genome Biol. 2001; 2(9): research0035.1–research0035.7. Published online 2001 Aug 20. doi: 10.1186/gb-2001-2-9-research0035
PMCID:
PMC56896
ArticlePDF–87K

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