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Items: 1 to 20 of 23

1.
Functional Diversification, Redundancy, and Epistasis among Paralogs of the Drosophila melanogaster Obp50a–d Gene Cluster
Joel A Johnstun, Vijay Shankar, Sneha S Mokashi, Lakshmi T Sunkara, Ugonna E Ihearahu, Roberta L Lyman, Trudy F C Mackay, Robert R H Anholt
Mol Biol Evol. 2021 May; 38(5): 2030–2044. Published online 2021 Feb 9. doi: 10.1093/molbev/msab004
PMCID:
PMC8097280
AbstractArticlePDF–1.7M
2.
Chemosensory sensilla of the Drosophila wing express a candidate ionotropic pheromone receptor
Zhe He, Yichen Luo, Xueying Shang, Jennifer S. Sun, John R. Carlson
PLoS Biol. 2019 May; 17(5): e2006619. Published online 2019 May 21. doi: 10.1371/journal.pbio.2006619
PMCID:
PMC6528970
AbstractArticlePDF–3.0M
3.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
4.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
5.
Expression Divergence of Chemosensory Genes between Drosophila sechellia and Its Sibling Species and Its Implications for Host Shift
Meng-Shin Shiao, Jia-Ming Chang, Wen-Lang Fan, Mei-Yeh Jade Lu, Cedric Notredame, Shu Fang, Rumi Kondo, Wen-Hsiung Li
Genome Biol Evol. 2015 Oct; 7(10): 2843–2858. Published online 2015 Oct 1. doi: 10.1093/gbe/evv183
PMCID:
PMC4684695
AbstractArticlePDF–495K
6.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
7.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
8.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
9.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
10.
Uncovering the Functional Constraints Underlying the Genomic Organization of the Odorant-Binding Protein Genes
Pablo Librado, Julio Rozas
Genome Biol Evol. 2013; 5(11): 2096–2108. Published online 2013 Oct 21. doi: 10.1093/gbe/evt158
PMCID:
PMC3845639
AbstractArticlePDF–835K
11.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
12.
Evolution of Gene Expression in the Drosophila Olfactory System
Artyom Kopp, Olga Barmina, Andrew M. Hamilton, Laura Higgins, Lauren M. McIntyre, Corbin D. Jones
Mol Biol Evol. 2008 Jun; 25(6): 1081–1092. Published online 2008 Feb 23. doi: 10.1093/molbev/msn055
PMCID:
PMC3299402
AbstractArticle
13.
Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System
Filipe G. Vieira, Julio Rozas
Genome Biol Evol. 2011; 3: 476–490. Published online 2011 Apr 28. doi: 10.1093/gbe/evr033
PMCID:
PMC3134979
AbstractArticlePDF–1.4M
14.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
15.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M
16.
Plasticity of the Chemoreceptor Repertoire in Drosophila melanogaster
Shanshan Zhou, Eric A. Stone, Trudy F. C. Mackay, Robert R. H. Anholt
PLoS Genet. 2009 Oct; 5(10): e1000681. Published online 2009 Oct 9. doi: 10.1371/journal.pgen.1000681
PMCID:
PMC2750752
AbstractArticlePDF–883K
17.
Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution
Filipe G Vieira, Alejandro Sánchez-Gracia, Julio Rozas
Genome Biol. 2007; 8(11): R235. Published online 2007 Nov 8. doi: 10.1186/gb-2007-8-11-r235
PMCID:
PMC2258175
AbstractArticlePDF–1.4M
18.
Combined Evidence Annotation of Transposable Elements in Genome Sequences
Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere
PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022
PMCID:
PMC1185648
AbstractArticlePDF–273K
19.
Genome-Wide Analysis of the Odorant-Binding Protein Gene Family in Drosophila melanogaster
Daria S. Hekmat-Scafe, Charles R. Scafe, Aimee J. McKinney, Mark A. Tanouye
Genome Res. 2002 Sep; 12(9): 1357–1369. doi: 10.1101/gr.239402
PMCID:
PMC186648
AbstractArticlePDF–631K
20.
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen
Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085
PMCID:
PMC151187
AbstractArticlePDF–280K

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