PMC Links for GEO Profiles (Select 40756493) - PMC

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Items: 15

Select item 94378481.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 91156792.

Filamin FLN-2 promotes MVB biogenesis by mediating vesicle docking on the actin cytoskeleton

Leiling Shi, Youli Jian, Meijiao Li, Tianchao Hao, Chonglin Yang, Xiaochen Wang

J Cell Biol. 2022 Jul 4; 221(7): e202201020. Published online 2022 May 16. doi: 10.1083/jcb.202201020

PMCID:: PMC9115679

Abstract Article PDF–6.2M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 79951764.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 74478035.

DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans

Kin Man Suen, Fabian Braukmann, Richard Butler, Dalila Bensaddek, Alper Akay, Chi-Chuan Lin, Dovilė Milonaitytė, Neel Doshi, Alexandra Sapetschnig, Angus Lamond, John Edward Ladbury, Eric Alexander Miska

Nat Commun. 2020; 11: 4242. Published online 2020 Aug 25. doi: 10.1038/s41467-020-18089-1

PMCID:: PMC7447803

Abstract Article PDF–2.3M

Select item 68164596.

Biochemical Approaches to Studying Caenorhabditis elegans ESCRT Functions In Vitro

Samuel Block, Amber L. Schuh, Anjon Audhya

Methods Mol Biol. Author manuscript; available in PMC 2020 Jan 1.

Published in final edited form as: Methods Mol Biol. 2019; 1998: 189–202. doi: 10.1007/978-1-4939-9492-2_14

PMCID:: PMC6816459

Abstract Article PDF–549K

Select item 62165907.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 56822828.

Ist1 regulates ESCRT-III assembly and function during multivesicular endosome biogenesis in Caenorhabditis elegans embryos

E. B. Frankel, Raakhee Shankar, James J. Moresco, John R. Yates, III, Niels Volkmann, Anjon Audhya

Nat Commun. 2017; 8: 1439. Published online 2017 Nov 13. doi: 10.1038/s41467-017-01636-8

PMCID:: PMC5682282

Abstract Article PDF–11M

Select item 45739029.

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo

Zhuo Du, Anthony Santella, Fei He, Pavak K. Shah, Yuko Kamikawa, Zhirong Bao

Dev Cell. Author manuscript; available in PMC 2016 Sep 14.

Published in final edited form as: Dev Cell. 2015 Sep 14; 34(5): 592–607. Published online 2015 Aug 27. doi: 10.1016/j.devcel.2015.07.014

PMCID:: PMC4573902

Abstract Article PDF–2.6M

Select item 416494710.

Structural analysis and modeling reveals new mechanisms governing ESCRT-III spiral filament assembly

Qing-Tao Shen, Amber L. Schuh, Yuqing Zheng, Kyle Quinney, Lei Wang, Michael Hanna, Julie C. Mitchell, Marisa S. Otegui, Paul Ahlquist, Qiang Cui, Anjon Audhya

J Cell Biol. 2014 Sep 15; 206(6): 763–777. doi: 10.1083/jcb.201403108

PMCID:: PMC4164947

Abstract Article PDF–5.1M

Select item 371811211.

Regulation of ubiquitin-dependent cargo sorting by multiple endocytic adaptors at the plasma membrane

Jonathan R. Mayers, Lei Wang, Jhuma Pramanik, Adam Johnson, Ali Sarkeshik, Yueju Wang, Witchuda Saengsawang, John R. Yates, III, Anjon Audhya

Proc Natl Acad Sci U S A. 2013 Jul 16; 110(29): 11857–11862. Published online 2013 Jul 1. doi: 10.1073/pnas.1302918110

PMCID:: PMC3718112

Abstract Article PDF–907K

Select item 319080712.

Association of the Endosomal Sorting Complex ESCRT-II with the Vps20 Subunit of ESCRT-III Generates a Curvature-sensitive Complex Capable of Nucleating ESCRT-III Filaments

Ian Fyfe, Amber L. Schuh, J. Michael Edwardson, Anjon Audhya

J Biol Chem. 2011 Sep 30; 286(39): 34262–34270. Published online 2011 Aug 11. doi: 10.1074/jbc.M111.266411

PMCID:: PMC3190807

Abstract Article PDF–2.0M

Select item 310207713.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 269436314.

An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans

Barbara Meissner, Adam Warner, Kim Wong, Nicholas Dube, Adam Lorch, Sheldon J. McKay, Jaswinder Khattra, Teresa Rogalski, Aruna Somasiri, Iasha Chaudhry, Rebecca M. Fox, David M. Miller, III, David L. Baillie, Robert A. Holt, Steven J. M. Jones, Marco A. Marra, Donald G. Moerman

PLoS Genet. 2009 Jun; 5(6): e1000537. Published online 2009 Jun 26. doi: 10.1371/journal.pgen.1000537