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Select item 114989421.

Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications

Alex M. Francette, Karen M. Arndt

Cell Rep. Author manuscript; available in PMC 2024 Oct 23.

Published in final edited form as: Cell Rep. 2024 Sep 24; 43(9): 114730. Published online 2024 Sep 7. doi: 10.1016/j.celrep.2024.114730

PMCID:: PMC11498942

Abstract Article PDF–3.8M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166424.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 102922105.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 98363486.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 95260747.

Suppressor mutations that make the essential transcription factor Spn1/Iws1 dispensable in Saccharomyces cerevisiae

Francheska López-Rivera, James Chuang, Dan Spatt, Rajaraman Gopalakrishnan, Fred Winston

Genetics. 2022 Oct; 222(2): iyac125. Published online 2022 Aug 17. doi: 10.1093/genetics/iyac125

PMCID:: PMC9526074

Abstract Article PDF–1.0M

Select item 92997888.

The Bur1 cyclin‐dependent kinase regulates telomere length in Saccharomyces cerevisiae

Carla J. Connelly, Sofia Vidal‐Cardenas, Stephanie Goldsmith, Carol W. Greider

Yeast. 2022 Mar; 39(3): 177–192. Published online 2021 Dec 2. doi: 10.1002/yea.3680

PMCID:: PMC9299788

Abstract Article PDF–651K

Select item 92860239.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 925854610.

A Saccharomyces cerevisiae model and screen to define the functional consequences of oncogenic histone missense mutations

Laramie D Lemon, Sneha Kannan, Kim Wai Mo, Miranda Adams, Haley G Choi, Alexander O D Gulka, Elise S Withers, Hasset T Nurelegne, Valeria Gomez, Reina E Ambrocio, Rhea Tumminkatti, Richard S Lee, Morris Wan, Milo B Fasken, Jennifer M Spangle, Anita H Corbett

G3 (Bethesda) 2022 Jul; 12(7): jkac120. Published online 2022 May 14. doi: 10.1093/g3journal/jkac120

PMCID:: PMC9258546

Abstract Article PDF–1.4M

Select item 920981111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 893644612.

Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast

Kathiresan Selvam, Dalton A. Plummer, Peng Mao, John J. Wyrick

PLoS Genet. 2022 Mar; 18(3): e1010085. Published online 2022 Mar 9. doi: 10.1371/journal.pgen.1010085

PMCID:: PMC8936446

Abstract Article PDF–3.6M

Select item 858330013.

Distinct roles of nucleosome sliding and histone modifications in controlling the fidelity of transcription initiation

Huiming Zhang, Zhaolian Lu, Yu Zhan, Judith Rodriguez, Chen Lu, Yong Xue, Zhenguo Lin

RNA Biol. 2021; 18(11): 1642–1652. Published online 2021 Jan 28. doi: 10.1080/15476286.2020.1860389

PMCID:: PMC8583300

Abstract Article PDF–6.6M

Select item 851195014.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 849296115.

Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier

Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor

Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755

PMCID:: PMC8492961

Abstract Article

Select item 845493216.

Deficiency of Polη in Saccharomyces cerevisiae reveals the impact of transcription on damage-induced cohesion

Pei-Shang Wu, Jan Grosser, Donald P. Cameron, Laura Baranello, Lena Ström

PLoS Genet. 2021 Sep; 17(9): e1009763. Published online 2021 Sep 9. doi: 10.1371/journal.pgen.1009763

PMCID:: PMC8454932

Abstract Article PDF–1.9M

Select item 842120417.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 837305518.

Core promoter activity contributes to chromatin-based regulation of internal cryptic promoters

Bo Bae Lee, Hyeonju Woo, Min Kyung Lee, SeoJung Youn, Sumin Lee, Jae-Seok Roe, Soo Young Lee, TaeSoo Kim

Nucleic Acids Res. 2021 Aug 20; 49(14): 8097–8109. Published online 2021 Jul 28. doi: 10.1093/nar/gkab639

PMCID:: PMC8373055

Abstract Article PDF–1.7M

Select item 832978719.

Set2‐mediated H3K36 methylation states redundantly repress the production of antisense transcripts: role in transcription regulation

Yu‐Chao Mei, Jiangpeng Feng, Fei He, Yu‐Min Li, Yafei Liu, Feng Li, Yu Chen, Hai‐Ning Du

FEBS Open Bio. 2021 Aug; 11(8): 2225–2235. Published online 2021 Jun 28. doi: 10.1002/2211-5463.13226

PMCID:: PMC8329787

Abstract Article PDF–1.2M

Select item 809411720.

SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase

Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston

J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130