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Items: 1 to 20 of 76

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Interactions between Fkh1 monomers stabilize its binding to DNA replication origins
Allan Reinapae, Ivar Ilves, Henel Jürgens, Signe Värv, Kersti Kristjuhan, Arnold Kristjuhan
J Biol Chem. 2023 Aug; 299(8): 105026. Published online 2023 Jul 7. doi: 10.1016/j.jbc.2023.105026
PMCID:
PMC10403728
AbstractArticlePDF–2.0M
4.
Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1
Julia Lettow, Felix Kliewe, Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2023; 69(2-3): 127–139. Published online 2023 Mar 1. doi: 10.1007/s00294-023-01262-6
PMCID:
PMC10163088
AbstractArticlePDF–1.2M
5.
SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest
Ayse Koca Caydasi, Anton Khmelinskii, Zoulfia Darieva, Bahtiyar Kurtulmus, Michael Knop, Gislene Pereira
Mol Biol Cell. 2023 Feb 1; 34(2): ar11. Published online 2023 Jan 13. doi: 10.1091/mbc.E20-03-0179
PMCID:
PMC9930528
AbstractArticlePDF–8.4M
6.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
7.
Dbf4 Zn-Finger Motif Is Specifically Required for Stimulation of Ctf19-Activated Origins in Saccharomyces cerevisiae
Meghan V. Petrie, Haiyang Zhang, Emily M. Arnold, Yan Gan, Oscar M. Aparicio
Genes (Basel) 2022 Dec; 13(12): 2202. Published online 2022 Nov 24. doi: 10.3390/genes13122202
PMCID:
PMC9778208
AbstractArticlePDF–4.4M
8.
Rpd3 regulates single-copy origins independently of the rDNA array by opposing Fkh1-mediated origin stimulation
Yiwei He, Meghan V. Petrie, Haiyang Zhang, Jared M. Peace, Oscar M. Aparicio
Proc Natl Acad Sci U S A. 2022 Oct 4; 119(40): e2212134119. Published online 2022 Sep 26. doi: 10.1073/pnas.2212134119
PMCID:
PMC9546531
AbstractArticlePDF–1.9M
9.
The RNA-binding protein Puf5 and the HMGB protein Ixr1 contribute to cell cycle progression through the regulation of cell cycle-specific expression of CLB1 in Saccharomyces cerevisiae
Megumi Sato, Kaoru Irie, Yasuyuki Suda, Tomoaki Mizuno, Kenji Irie
PLoS Genet. 2022 Jul; 18(7): e1010340. Published online 2022 Jul 29. doi: 10.1371/journal.pgen.1010340
PMCID:
PMC9365169
AbstractArticlePDF–3.7M
10.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
11.
The Fkh1 Forkhead associated domain promotes ORC binding to a subset of DNA replication origins in budding yeast
Timothy Hoggard, Allison J Hollatz, Rachel E Cherney, Melissa R Seman, Catherine A Fox
Nucleic Acids Res. 2021 Oct 11; 49(18): 10207–10220. Published online 2021 Jun 7. doi: 10.1093/nar/gkab450
PMCID:
PMC8501964
AbstractArticlePDF–1.4M
12.
Forkhead transcription factor Fkh1: insights into functional regulatory domains crucial for recruitment of Sin3 histone deacetylase complex
Rasha Aref, Marwa N. M. E. Sanad, Hans-Joachim Schüller
Curr Genet. 2021; 67(3): 487–499. Published online 2021 Feb 26. doi: 10.1007/s00294-021-01158-3
PMCID:
PMC8139909
AbstractArticlePDF–2.4M
13.
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast
Thierry D G A Mondeel, Petter Holland, Jens Nielsen, Matteo Barberis
Nucleic Acids Res. 2019 Sep 5; 47(15): 7825–7841. Published online 2019 Jul 12. doi: 10.1093/nar/gkz603
PMCID:
PMC6736057
AbstractArticlePDF–4.0M
14.
Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis
Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos
Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022
PMCID:
PMC6715774
AbstractArticle
15.
Dynamic relocalization of replication origins by Fkh1 requires execution of DDK function and Cdc45 loading at origins
Haiyang Zhang, Meghan V Petrie, Yiwei He, Jared M Peace, Irene E Chiolo, Oscar M Aparicio
eLife. 2019; 8: e45512. Published online 2019 May 14. doi: 10.7554/eLife.45512
PMCID:
PMC6533057
AbstractArticlePDF–2.7M
16.
Multiplexed precision genome editing with trackable genomic barcodes in yeast
Kevin R. Roy, Justin D. Smith, Sibylle C. Vonesch, Gen Lin, Chelsea Szu Tu, Alex R. Lederer, Angela Chu, Sundari Suresh, Michelle Nguyen, Joe Horecka, Ashutosh Tripathi, Wallace T. Burnett, Maddison A. Morgan, Julia Schulz, Kevin M. Orsley, Wu Wei, Raeka S. Aiyar, Ronald W. Davis, Vytas A. Bankaitis, James E. Haber, Marc L. Salit, Robert P. St Onge, Lars M. Steinmetz
Nat Biotechnol. Author manuscript; available in PMC 2018 Nov 7.
Published in final edited form as: Nat Biotechnol. 2018 Jul; 36(6): 512–520. Published online 2018 May 7. doi: 10.1038/nbt.4137
PMCID:
PMC5990450
AbstractArticlePDF–1.7M
17.
Rapid Nuclear Exclusion of Hcm1 in Aging Saccharomyces cerevisiae Leads to Vacuolar Alkalization and Replicative Senescence
Ata Ghavidel, Kunal Baxi, Martin Prusinkiewicz, Cynthia Swan, Zach R. Belak, Christopher H. Eskiw, Carlos E. Carvalho, Troy A. Harkness
G3 (Bethesda) 2018 May; 8(5): 1579–1592. Published online 2018 Mar 8. doi: 10.1534/g3.118.200161
PMCID:
PMC5940150
AbstractArticlePDF–2.3M
18.
Dbf4 recruitment by forkhead transcription factors defines an upstream rate-limiting step in determining origin firing timing
Dingqiang Fang, Armelle Lengronne, Di Shi, Romain Forey, Magdalena Skrzypczak, Krzysztof Ginalski, Changhui Yan, Xiaoke Wang, Qinhong Cao, Philippe Pasero, Huiqiang Lou
Genes Dev. 2017 Dec 1; 31(23-24): 2405–2415. doi: 10.1101/gad.306571.117
PMCID:
PMC5795786
AbstractArticlePDF–7.1M
19.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
20.
Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly
Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt
Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4
PMCID:
PMC5738357
AbstractArticlePDF–3.1M

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