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Select item 111094831.

K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors

Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer

Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740

PMCID:: PMC11109483

Abstract Article PDF–2.9M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102922104.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 101654755.

Distinct domains in Ndc1 mediate its interaction with the Nup84 complex and the nuclear membrane

Ingo Amm, Marion Weberruss, Andrea Hellwig, Johannes Schwarz, Marianna Tatarek-Nossol, Christian Lüchtenborg, Martina Kallas, Britta Brügger, Ed Hurt, Wolfram Antonin

J Cell Biol. 2023 Jun 5; 222(6): e202210059. Published online 2023 May 8. doi: 10.1083/jcb.202210059

PMCID:: PMC10165475

Abstract Article PDF–7.8M

Select item 98363486.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 94022337.

An amphipathic helix in Brl1 is required for nuclear pore complex biogenesis in S. cerevisiae

Annemarie Kralt, Matthias Wojtynek, Jonas S Fischer, Arantxa Agote-Aran, Roberta Mancini, Elisa Dultz, Elad Noor, Federico Uliana, Marianna Tatarek-Nossol, Wolfram Antonin, Evgeny Onischenko, Ohad Medalia, Karsten Weis

eLife. 2022; 11: e78385. Published online 2022 Aug 24. doi: 10.7554/eLife.78385

PMCID:: PMC9402233

Abstract Article PDF–14M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85850049.

A nuclear pore sub-complex restricts the propagation of Ty retrotransposons by limiting their transcription

Amandine Bonnet, Carole Chaput, Noé Palmic, Benoit Palancade, Pascale Lesage

PLoS Genet. 2021 Nov; 17(11): e1009889. Published online 2021 Nov 1. doi: 10.1371/journal.pgen.1009889

PMCID:: PMC8585004

Abstract Article PDF–2.5M

Select item 835352610.

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription

David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz

J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051

PMCID:: PMC8353526

Abstract Article

Select item 812137811.

Dissecting the Structural Dynamics of the Nuclear Pore Complex

Zhanna Hakhverdyan, Kelly R. Molloy, Sarah Keegan, Thurston Herricks, Dante M. Lepore, Mary Munson, Roman I. Subbotin, David Fenyo, John D. Aitchison, Javier Fernandez-Martinez, Brian T. Chait, Michael P. Rout

Mol Cell. Author manuscript; available in PMC 2022 Jan 7.

Published in final edited form as: Mol Cell. 2021 Jan 7; 81(1): 153–165.e7. Published online 2020 Dec 16. doi: 10.1016/j.molcel.2020.11.032

PMCID:: PMC8121378

Abstract Article PDF–2.1M

Select item 771072212.

A nanobody suite for yeast scaffold nucleoporins provides details of the nuclear pore complex structure

Sarah A. Nordeen, Kasper R. Andersen, Kevin E. Knockenhauer, Jessica R. Ingram, Hidde L. Ploegh, Thomas U. Schwartz

Nat Commun. 2020; 11: 6179. Published online 2020 Dec 2. doi: 10.1038/s41467-020-19884-6

PMCID:: PMC7710722

Abstract Article PDF–7.9M

Select item 770806313.

The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis

Caroline Lacoux, Ludivine Wacheul, Kritika Saraf, Nicolas Pythoud, Emmeline Huvelle, Sabine Figaro, Marc Graille, Christine Carapito, Denis L J Lafontaine, Valérie Heurgué-Hamard

Nucleic Acids Res. 2020 Dec 2; 48(21): 12310–12325. Published online 2020 Nov 9. doi: 10.1093/nar/gkaa972

PMCID:: PMC7708063

Abstract Article PDF–4.8M

Select item 769569414.

Yeast Nup84-Nup133 complex structure details flexibility and reveals conservation of the membrane anchoring ALPS motif

Sarah A. Nordeen, Daniel L. Turman, Thomas U. Schwartz

Nat Commun. 2020; 11: 6060. Published online 2020 Nov 27. doi: 10.1038/s41467-020-19885-5

PMCID:: PMC7695694

Abstract Article PDF–2.0M

Select item 768298815.

The deubiquitylase Ubp15 couples transcription to mRNA export

Fanny Eyboulet, Célia Jeronimo, Jacques Côté, François Robert

eLife. 2020; 9: e61264. Published online 2020 Nov 23. doi: 10.7554/eLife.61264

PMCID:: PMC7682988

Abstract Article PDF–1.4M

Select item 767243316.

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2

Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit

Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964

PMCID:: PMC7672433

Abstract Article PDF–6.0M

Select item 733748817.

TORC1 inactivation stimulates autophagy of nucleoporin and nuclear pore complexes

Yui Tomioka, Tetsuya Kotani, Hiromi Kirisako, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Yoshinori Ohsumi, Hitoshi Nakatogawa

J Cell Biol. 2020 Jul 6; 219(7): e201910063. Published online 2020 May 26. doi: 10.1083/jcb.201910063

PMCID:: PMC7337488

Abstract Article PDF–4.0M

Select item 718138618.

Extranuclear Structural Components that Mediate Dynamic Chromosome Movements in Yeast Meiosis

Chih-Ying Lee, Carlos Gaston Bisig, Michael M. Conrad, Yanina Ditamo, Luciana Previato, Michael E. Dresser, Roberto J. Pezza

Curr Biol. Author manuscript; available in PMC 2021 Apr 6.

Published in final edited form as: Curr Biol. 2020 Apr 6; 30(7): 1207–1216.e4. Published online 2020 Feb 13. doi: 10.1016/j.cub.2020.01.054

PMCID:: PMC7181386

Abstract Article PDF–1.1M

Select item 671170619.

A nuclear role for the DEAD-box protein Dbp5 in tRNA export

Azra Lari, Arvind Arul Nambi Rajan, Rima Sandhu, Taylor Reiter, Rachel Montpetit, Barry P Young, Chris JR Loewen, Ben Montpetit

eLife. 2019; 8: e48410. Published online 2019 Aug 27. doi: 10.7554/eLife.48410

Correction in:: eLife. 2020; 9: e63264.

PMCID:: PMC6711706

Abstract Article PDF–3.8M

Select item 664889520.

Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME

Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy

Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317