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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 96309864.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 90088416.

Cyclin C-Cdk8 Kinase Phosphorylation of Rim15 Prevents the Aberrant Activation of Stress Response Genes

Stephen D. Willis, Sara E. Hanley, Steven J. Doyle, Katherine Beluch, Randy Strich, Katrina F. Cooper

Front Cell Dev Biol. 2022; 10: 867257. Published online 2022 Mar 31. doi: 10.3389/fcell.2022.867257

PMCID:: PMC9008841

Abstract Article PDF–3.7M

Select item 86645867.

TORC1 signaling modulates Cdk8-dependent GAL gene expression in Saccharomyces cerevisiae

Riley Horvath, Nicole Hawe, Cindy Lam, Konstantin Mestnikov, Mariam Eji-Lasisi, John Rohde, Ivan Sadowski

Genetics. 2021 Dec; 219(4): iyab168. Published online 2021 Oct 5. doi: 10.1093/genetics/iyab168

PMCID:: PMC8664586

Abstract Article PDF–1.2M

Select item 83535268.

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription

David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz

J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051

PMCID:: PMC8353526

Abstract Article

Select item 81913329.

The Cdk8 kinase module regulates interaction of the mediator complex with RNA polymerase II

Sara Osman, Eusra Mohammad, Michael Lidschreiber, Alexandra Stuetzer, Fanni Laura Bazsó, Kerstin C. Maier, Henning Urlaub, Patrick Cramer

J Biol Chem. 2021 Jan-Jun; 296: 100734. Published online 2021 Apr 30. doi: 10.1016/j.jbc.2021.100734

PMCID:: PMC8191332

Abstract Article PDF–2.6M

Select item 781038410.

Structure and noncanonical Cdk8 activation mechanism within an Argonaute-containing Mediator kinase module

Yi-Chuan Li, Ti-Chun Chao, Hee Jong Kim, Timothy Cholko, Shin-Fu Chen, Guojie Li, Laura Snyder, Kotaro Nakanishi, Chia-en Chang, Kenji Murakami, Benjamin A. Garcia, Thomas G. Boyer, Kuang-Lei Tsai

Sci Adv. 2021 Jan; 7(3): eabd4484. Published online 2021 Jan 15. doi: 10.1126/sciadv.abd4484

PMCID:: PMC7810384

Abstract Article PDF–4.3M

Select item 734672311.

Ubiquitin–proteasome-mediated cyclin C degradation promotes cell survival following nitrogen starvation

Stephen D. Willis, Sara E. Hanley, Thomas Beishke, Prasanna D. Tati, Katrina F. Cooper

Mol Biol Cell. 2020 May 1; 31(10): 1015–1031. doi: 10.1091/mbc.E19-11-0622

PMCID:: PMC7346723

Abstract Article PDF–4.6M

Select item 713833212.

Evolutionary repair: Changes in multiple functional modules allow meiotic cohesin to support mitosis

Yu-Ying Phoebe Hsieh, Vasso Makrantoni, Daniel Robertson, Adèle L. Marston, Andrew W. Murray

PLoS Biol. 2020 Mar; 18(3): e3000635. Published online 2020 Mar 10. doi: 10.1371/journal.pbio.3000635

PMCID:: PMC7138332

Abstract Article PDF–3.6M

Select item 708593213.

Transfer of the Septin Ring to Cytokinetic Remnants in ER stress Directs Age-Sensitive Cell Cycle Re-entry

Jesse T. Chao, Francisco Piña, Masayuki Onishi, Yifat Cohen, Ya-Shiuan Lai, Maya Schuldiner, Maho Niwa

Dev Cell. Author manuscript; available in PMC 2020 Oct 21.

Published in final edited form as: Dev Cell. 2019 Oct 21; 51(2): 173–191.e5. Published online 2019 Sep 26. doi: 10.1016/j.devcel.2019.08.017

PMCID:: PMC7085932

Abstract Article PDF–2.5M

Select item 706580514.

Multi-kinase control of environmental stress responsive transcription

Kieran Mace, Joanna Krakowiak, Hana El-Samad, David Pincus

PLoS One. 2020; 15(3): e0230246. Published online 2020 Mar 11. doi: 10.1371/journal.pone.0230246

PMCID:: PMC7065805

Abstract Article PDF–4.4M

Select item 682732215.

Regulation of Skn7-dependent, oxidative stress-induced genes by the RNA polymerase II-CTD phosphatase, Fcp1, and Mediator kinase subunit, Cdk8, in yeast

Maria J. Aristizabal, Kristy Dever, Gian Luca Negri, Mary Shen, Nicole Hawe, Joris J. Benschop, Frank C. P. Holstege, Nevan J. Krogan, Ivan Sadowski, Michael S. Kobor

J Biol Chem. 2019 Nov 1; 294(44): 16080–16094. Published online 2019 Sep 10. doi: 10.1074/jbc.RA119.008515

PMCID:: PMC6827322

Abstract Article PDF–3.3M

Select item 666992216.

Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism

Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis

EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433