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Items: 1 to 20 of 27

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
4.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
5.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
6.
Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly
Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt
Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4
PMCID:
PMC5738357
AbstractArticlePDF–3.1M
7.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
8.
Structural insights into transcription initiation by yeast RNA polymerase I
Yashar Sadian, Lucas Tafur, Jan Kosinski, Arjen J Jakobi, Rene Wetzel, Katarzyna Buczak, Wim JH Hagen, Martin Beck, Carsten Sachse, Christoph W Müller
EMBO J. 2017 Sep 15; 36(18): 2698–2709. Published online 2017 Jul 24. doi: 10.15252/embj.201796958
PMCID:
PMC5599796
AbstractArticlePDF–2.6M
9.
Structural mechanism of ATP-independent transcription initiation by RNA polymerase I
Yan Han, Chunli Yan, Thi Hoang Duong Nguyen, Ashleigh J Jackobel, Ivaylo Ivanov, Bruce A Knutson, Yuan He
eLife. 2017; 6: e27414. Published online 2017 Jun 17. doi: 10.7554/eLife.27414
PMCID:
PMC5489313
AbstractArticlePDF–5.6M
10.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
11.
Architecture of the S. cerevisiae RNA polymerase I Core Factor complex
Bruce A. Knutson, Jie Luo, Jeffrey Ranish, Steven Hahn
Nat Struct Mol Biol. Author manuscript; available in PMC 2015 Mar 1.
Published in final edited form as: Nat Struct Mol Biol. 2014 Sep; 21(9): 810–816. Published online 2014 Aug 17. doi: 10.1038/nsmb.2873
PMCID:
PMC4219626
AbstractArticlePDF–2.7M
12.
Whi3, an S. cerevisiae RNA-Binding Protein, Is a Component of Stress Granules That Regulates Levels of Its Target mRNAs
Kristen J. Holmes, Daniel M. Klass, Evan L. Guiney, Martha S. Cyert
PLoS One. 2013; 8(12): e84060. Published online 2013 Dec 27. doi: 10.1371/journal.pone.0084060
PMCID:
PMC3873981
AbstractArticlePDF–11M
13.
The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP
Richa Sardana, Joshua P. White, Arlen W. Johnson
RNA. 2013 Jun; 19(6): 828–840. doi: 10.1261/rna.037671.112
PMCID:
PMC3683916
AbstractArticlePDF–784K
14.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
15.
Global Analysis of Yeast mRNPs
Sarah F. Mitchell, Saumya Jain, Meipei She, Roy Parker
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 1.
Published in final edited form as: Nat Struct Mol Biol. 2013 Jan; 20(1): 127–133. Published online 2012 Dec 9. doi: 10.1038/nsmb.2468
PMCID:
PMC3537908
AbstractArticlePDF–1.2M
16.
Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae
Cheol Woong Ha, Min-Kyung Sung, Won-Ki Huh
Nucleic Acids Res. 2012 Jun; 40(11): 4892–4903. Published online 2012 Feb 22. doi: 10.1093/nar/gks188
PMCID:
PMC3367210
AbstractArticlePDF–1.8M
17.
Yeast Rrn7 and human TAF1B are TFIIB-related RNA polymerase I general transcription factors
Bruce A. Knutson, Steven Hahn
Science. Author manuscript; available in PMC 2012 Apr 4.
Published in final edited form as: Science. 2011 Sep 16; 333(6049): 1637–1640. doi: 10.1126/science.1207699
PMCID:
PMC3319074
AbstractArticlePDF–1.5M
18.
Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth
Claudia Blattner, Stefan Jennebach, Franz Herzog, Andreas Mayer, Alan C.M. Cheung, Gregor Witte, Kristina Lorenzen, Karl-Peter Hopfner, Albert J.R. Heck, Ruedi Aebersold, Patrick Cramer
Genes Dev. 2011 Oct 1; 25(19): 2093–2105. doi: 10.1101/gad.17363311
PMCID:
PMC3197207
AbstractArticlePDF–1.9M
19.
Alternative Chromatin Structures of the 35S rRNA Genes in Saccharomyces cerevisiae Provide a Molecular Basis for the Selective Recruitment of RNA Polymerases I and II
Hannah Goetze, Manuel Wittner, Stephan Hamperl, Maria Hondele, Katharina Merz, Ulrike Stoeckl, Joachim Griesenbeck
Mol Cell Biol. 2010 Apr; 30(8): 2028–2045. Published online 2010 Feb 12. doi: 10.1128/MCB.01512-09
PMCID:
PMC2849473
AbstractArticlePDF–8.9M
20.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M

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