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Items: 20

1.
Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins
Benjamin Lang, Jae-Seong Yang, Mireia Garriga-Canut, Silvia Speroni, Moritz Aschern, Maria Gili, Tobias Hoffmann, Gian Gaetano Tartaglia, Sebastian P Maurer
Nucleic Acids Res. 2021 Jul 9; 49(12): 6702–6721. Published online 2021 Jun 16. doi: 10.1093/nar/gkab490
PMCID:
PMC8266617
AbstractArticlePDF–4.0M
2.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
3.
ATG5 is required for B cell polarization and presentation of particulate antigens
Florent Arbogast, Johan Arnold, Philippe Hammann, Lauriane Kuhn, Johana Chicher, Diane Murera, Justine Weishaar, Sylviane Muller, Jean-Daniel Fauny, Frédéric Gros
Autophagy. 2019; 15(2): 280–294. Published online 2018 Sep 22. doi: 10.1080/15548627.2018.1516327
PMCID:
PMC6333460
AbstractArticlePDF–2.7M
4.
Cstf2t Regulates Expression of Histones and Histone-like Proteins in Male Germ Cells
Petar N. Grozdanov, Jin Li, Peng Yu, Wei Yan, Clinton C. MacDonald
Andrology. Author manuscript; available in PMC 2019 Jul 1.
Published in final edited form as: Andrology. 2018 Jul; 6(4): 605–615. Published online 2018 Apr 19. doi: 10.1111/andr.12488
PMCID:
PMC6105451
AbstractArticlePDF–1.2M
5.
The Cstf2t Polyadenylation Gene Plays a Sex-Specific Role in Learning Behaviors in Mice
Jaryse C. Harris, Joseph M. Martinez, Petar N. Grozdanov, Susan E. Bergeson, Paula Grammas, Clinton C. MacDonald
PLoS One. 2016; 11(11): e0165976. Published online 2016 Nov 3. doi: 10.1371/journal.pone.0165976
PMCID:
PMC5094787
AbstractArticlePDF–3.2M
6.
TauCstF-64 Mediates Correct mRNA Polyadenylation and Splicing of Activator and Repressor Isoforms of the Cyclic AMP-Responsive Element Modulator (CREM) in Mouse Testis
Petar N. Grozdanov, Atia Amatullah, Joel H. Graber, Clinton C. MacDonald
Biol Reprod. 2016 Feb; 94(2): 34. Published online 2015 Dec 23. doi: 10.1095/biolreprod.115.134684
PMCID:
PMC4787626
AbstractArticlePDF–1.0M
7.
The τCstF-64 Polyadenylation Protein Controls Genome Expression in Testis
Wencheng Li, Hsiang-Jui Yeh, Ganesh S. Shankarling, Zhe Ji, Bin Tian, Clinton C. MacDonald
PLoS One. 2012; 7(10): e48373. Published online 2012 Oct 26. doi: 10.1371/journal.pone.0048373
PMCID:
PMC3482194
AbstractArticlePDF–705K
8.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
9.
Spermatogenetic But Not Immunological Defects in Mice Lacking the τCstF-64 Polyadenylation Protein
Kathy J. Hockert, Kathleen Martincic, S. M. L. C. Mendis-Handagama, Lisa Ann Borghesi, Christine Milcarek, Brinda Dass, Clinton C. MacDonald
J Reprod Immunol. Author manuscript; available in PMC 2012 Apr 13.
Published in final edited form as: J Reprod Immunol. 2011 Apr; 89(1): 26–37. Published online 2011 Apr 13. doi: 10.1016/j.jri.2011.01.018
PMCID:
PMC3081895
AbstractArticlePDF–2.4M
10.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
11.
Infertility with Impaired Zona Pellucida Adhesion of Spermatozoa from Mice Lacking TauCstF-64
Steve Tardif, Amma S. Akrofi, Brinda Dass, Daniel M. Hardy, Clinton C. MacDonald
Biol Reprod. 2010 Sep; 83(3): 464–472. Published online 2010 May 12. doi: 10.1095/biolreprod.109.083238
PMCID:
PMC2924806
AbstractArticlePDF–2.8M
12.
A family of splice variants of CstF-64 expressed in vertebrate nervous systems
Ganesh S Shankarling, Penelope W Coates, Brinda Dass, Clinton C MacDonald
BMC Mol Biol. 2009; 10: 22. Published online 2009 Mar 12. doi: 10.1186/1471-2199-10-22
PMCID:
PMC2660332
AbstractArticlePDF–926K
13.
Loss of polyadenylation protein τCstF-64 causes spermatogenic defects and male infertility
Brinda Dass, Steve Tardif, Ji Yeon Park, Bin Tian, Harry M. Weitlauf, Rex A. Hess, Kay Carnes, Michael D. Griswold, Christopher L. Small, Clinton C. MacDonald
Proc Natl Acad Sci U S A. 2007 Dec 18; 104(51): 20374–20379. Published online 2007 Dec 12. doi: 10.1073/pnas.0707589104
PMCID:
PMC2154438
AbstractArticlePDF–915K
14.
Polyadenylation proteins CstF-64 and τCstF-64 exhibit differential binding affinities for RNA polymers
Roberto R. Monarez, Clinton C. Macdonald, Brinda Dass
Biochem J. 2007 Feb 1; 401(Pt 3): 651–658. Prepublished online 2006 Oct 10. Published online 2007 Jan 12. doi: 10.1042/BJ20061097
PMCID:
PMC1770853
AbstractArticlePDF–434K
15.
A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain
Adrienne E McKee, Emmanuel Minet, Charlene Stern, Shervin Riahi, Charles D Stiles, Pamela A Silver
BMC Dev Biol. 2005; 5: 14. Published online 2005 Jul 20. doi: 10.1186/1471-213X-5-14
PMCID:
PMC1199591
AbstractArticlePDF–2.0M
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
20.
Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray
Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko
Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127
PMCID:
PMC16833
AbstractArticlePDF–847K

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