PMC Links for GEO Profiles (Select 43122078) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 36110084.

F₁-ATPase of Escherichia coli: THE ϵ-INHIBITED STATE FORMS AFTER ATP HYDROLYSIS, IS DISTINCT FROM THE ADP-INHIBITED STATE, AND RESPONDS DYNAMICALLY TO CATALYTIC SITE LIGANDS

Naman B. Shah, Marcus L. Hutcheon, Brian K. Haarer, Thomas M. Duncan

J Biol Chem. 2013 Mar 29; 288(13): 9383–9395. Published online 2013 Feb 11. doi: 10.1074/jbc.M113.451583

PMCID:: PMC3611008

Abstract Article PDF–1.6M

Select item 31091985.

Structure of the ATP synthase catalytic complex (F₁) from Escherichia coli in an auto-inhibited conformation

Gino Cingolani, Thomas M. Duncan

Nat Struct Mol Biol. Author manuscript; available in PMC 2011 Dec 1.

Published in final edited form as: Nat Struct Mol Biol. 2011 Jun; 18(6): 701–707. Published online 2011 May 22. doi: 10.1038/nsmb.2058

PMCID:: PMC3109198

Abstract Article PDF–2.7M

Select item 29110206.

The Differential Affinity of the Usher for Chaperone-Subunit Complexes is Required for Assembly of Complete Pili

Qinyuan Li, Tony W. Ng, Karen W. Dodson, Stephane Shu Kin So, Ken-Michael Bayle, Jerome S. Pinkner, Suzanne Scarlata, Scott J. Hultgren, David G. Thanassi

Mol Microbiol. Author manuscript; available in PMC 2011 Apr 1.

Published in final edited form as: Mol Microbiol. 2010 Apr; 76(1): 159–172. Published online 2010 Feb 24. doi: 10.1111/j.1365-2958.2010.07089.x

PMCID:: PMC2911020

Abstract Article PDF–1.6M

Select item 27946607.

Nitrosative stress treatment of E. coli targets distinct set of thiol-containing proteins

Nicolas Brandes, Andrea Rinck, Lars Ingo Leichert, Ursula Jakob

Mol Microbiol. Author manuscript; available in PMC 2009 Dec 16.

Published in final edited form as: Mol Microbiol. 2007 Nov; 66(4): 901–914. Published online 2007 Oct 5. doi: 10.1111/j.1365-2958.2007.05964.x

PMCID:: PMC2794660

Abstract Article PDF–1.5M

Select item 27370498.

Single Molecule Measurements of F₁-ATPase Reveal an Interdependence between the Power Stroke and the Dwell Duration

David Spetzler, Robert Ishmukhametov, Tassilo Hornung, Lixia Jin Day, James Martin, Wayne D. Frasch

Biochemistry. Author manuscript; available in PMC 2010 Aug 25.

Published in final edited form as: Biochemistry. 2009 Aug 25; 48(33): 7979–7985. doi: 10.1021/bi9008215

PMCID:: PMC2737049

Abstract Article PDF–1.2M

Select item 26677629.

Role of α-Subunit VISIT-DG Sequence Residues Ser-347 and Gly-351 in the Catalytic Sites of Escherichia coli ATP Synthase

Wenzong Li, Laura E. Brudecki, Alan E. Senior, Zulfiqar Ahmad

J Biol Chem. 2009 Apr 17; 284(16): 10747–10754. doi: 10.1074/jbc.M809209200

PMCID:: PMC2667762

Abstract Article PDF–1.0M

Select item 258470010.

Domain compliance and elastic power transmission in rotary F_OF₁-ATPase

Hendrik Sielaff, Henning Rennekamp, André Wächter, Hao Xie, Florian Hilbers, Katrin Feldbauer, Stanley D. Dunn, Siegfried Engelbrecht, Wolfgang Junge

Proc Natl Acad Sci U S A. 2008 Nov 18; 105(46): 17760–17765. Published online 2008 Nov 10. doi: 10.1073/pnas.0807683105

PMCID:: PMC2584700

Abstract Article PDF–802K

Select item 254828711.

Assembly of the stator in Escherichia coli ATP synthase. Complexation of alpha subunit with other F₁ subunits is prerequisite for delta subunit binding to the N-terminal region of alpha

Alan E. Senior, Alma Muharemagi, Susan Wilke-Mounts

Biochemistry. Author manuscript; available in PMC 2008 Sep 23.

Published in final edited form as: Biochemistry. 2006 Dec 26; 45(51): 15893–15902. Published online 2006 Dec 5. doi: 10.1021/bi0619730

PMCID:: PMC2548287

Abstract Article PDF–675K

Select item 252900612.

A Functionally Important Hydrogen-bonding Network at the β_DP/α_DP Interface of ATP Synthase

Hui Z. Mao, Christopher G. Abraham, Arathianand M. Krishnakumar, Joachim Weber

J Biol Chem. 2008 Sep 5; 283(36): 24781–24788. doi: 10.1074/jbc.M804142200

PMCID:: PMC2529006

Abstract Article PDF–281K

Select item 243100113.

Subunit a Facilitates Aqueous Access to a Membrane-embedded Region of Subunit c in Escherichia coli F₁F₀ ATP Synthase

P. Ryan Steed, Robert H. Fillingame

J Biol Chem. 2008 May 2; 283(18): 12365–12372. doi: 10.1074/jbc.M800901200

PMCID:: PMC2431001

Abstract Article PDF–479K

Select item 191443814.

A Programmable Optical Angle Clamp for Rotary Molecular Motors

Teuta Pilizota, Thomas Bilyard, Fan Bai, Masamitsu Futai, Hiroyuki Hosokawa, Richard M. Berry

Biophys J. 2007 Jul 1; 93(1): 264–275. Published online 2007 Apr 13. doi: 10.1529/biophysj.106.091074

PMCID:: PMC1914438

Abstract Article PDF–737K

Select item 179730915.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 169820916.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla

J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06

PMCID:: PMC1698209

Abstract Article PDF–779K

Select item 168148117.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 159552618.

Alterations of Cellular Physiology in Escherichia coli in Response to Oxidative Phosphorylation Impaired by Defective F₁-ATPase

Sakiko Noda, Yuji Takezawa, Tomohiko Mizutani, Tomoaki Asakura, Eiichiro Nishiumi, Kazunori Onoe, Masaru Wada, Fusao Tomita, Kazunobu Matsushita, Atsushi Yokota

J Bacteriol. 2006 Oct; 188(19): 6869–6876. doi: 10.1128/JB.00452-06

PMCID:: PMC1595526

Abstract Article PDF–148K

Select item 153896519.

A functionally inactive, cold-stabilized form of the Escherichia coli F₁F_o ATP synthase

Mikhail A. Galkin, Robert R. Ishmukhametov, Steven B. Vik

Biochim Biophys Acta. Author manuscript; available in PMC 2007 Mar 1.

Published in final edited form as: Biochim Biophys Acta. 2006 Mar; 1757(3): 206–214. Published online 2006 Mar 20. doi: 10.1016/j.bbabio.2006.02.011

PMCID:: PMC1538965

Abstract Article PDF–701K

Select item 145705220.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806