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Select item 77045651.

Effects of Distal Mutations on Prolyl-adenylate Formation of Escherichia coli Prolyl-tRNA Synthetase

Jonathan Zajac, Heidi Anderson, Lauren Adams, Dechen Wangmo, Shanzay Suhail, Aimee Almen, Lauren Berns, Breanna Coerber, Logan Dawson, Andrea Hunger, Julia Jehn, Joseph Johnson, Naomi Plack, Steven Strasser, Murphi Williams, Sudeep Bhattacharyya, Sanchita Hati

Protein J. Author manuscript; available in PMC 2021 Oct 1.

Published in final edited form as: Protein J. 2020 Oct; 39(5): 542–553. doi: 10.1007/s10930-020-09910-3

PMCID:: PMC7704565

Abstract Article PDF–1.5M

Select item 63448942.

Stoichiometry of triple-sieve tRNA editing complex ensures fidelity of aminoacyl-tRNA formation

Lin Chen, Akiko Tanimoto, Byung Ran So, Marina Bakhtina, Thomas J Magliery, Vicki H Wysocki, Karin Musier-Forsyth

Nucleic Acids Res. 2019 Jan 25; 47(2): 929–940. Published online 2018 Nov 12. doi: 10.1093/nar/gky1153

PMCID:: PMC6344894

Abstract Article PDF–5.0M

Select item 37498793.

Multiple Pathways Promote Dynamical Coupling between Catalytic Domains in Escherichia coli Prolyl-tRNA Synthetase

James M. Johnson, Brianne L. Sanford, Alexander M. Strom, Stephanie N. Tadayon, Brent P. Lehman, Arrianna M. Zirbes, Sudeep Bhattacharyya, Karin Musier-Forsyth, Sanchita Hati

Biochemistry. Author manuscript; available in PMC 2014 Jun 25.

Published in final edited form as: Biochemistry. 2013 Jun 25; 52(25): 4399–4412. Published online 2013 Jun 17. doi: 10.1021/bi400079h

PMCID:: PMC3749879

Abstract Article PDF–1.8M

Select item 32709724.

Substrate Specificity of Bacterial Prolyl-tRNA Synthetase Editing Domain Is Controlled by a Tunable Hydrophobic Pocket

Sandeep Kumar, Mom Das, Christopher M. Hadad, Karin Musier-Forsyth

J Biol Chem. 2012 Jan 27; 287(5): 3175–3184. Published online 2011 Nov 29. doi: 10.1074/jbc.M111.313619

PMCID:: PMC3270972

Abstract Article PDF–2.3M

Select item 25754495.

Quality control despite mistranslation caused by an ambiguous genetic code

Benfang Ruan, Sotiria Palioura, Jeffrey Sabina, Laure Marvin-Guy, Sunil Kochhar, Robert A. LaRossa, Dieter Söll

Proc Natl Acad Sci U S A. 2008 Oct 28; 105(43): 16502–16507. Published online 2008 Oct 22. doi: 10.1073/pnas.0809179105

PMCID:: PMC2575449

Abstract Article PDF–983K

Select item 25599416.

Functional Guanine-Arginine Interaction Between tRNA^Pro and Prolyl-tRNA Synthetase that Couples Binding and Catalysis

Brian Burke, Songon An, Karin Musier-Forsyth

Biochim Biophys Acta. Author manuscript; available in PMC 2009 Sep 1.

Published in final edited form as: Biochim Biophys Acta. 2008 Sep; 1784(9): 1222–1225. Published online 2008 May 10. doi: 10.1016/j.bbapap.2008.04.027

PMCID:: PMC2559941

Abstract Article PDF–432K

Select item 23774477.

Evolution of acceptor stem tRNA recognition by class II prolyl-tRNA synthetase

Songon An, George Barany, Karin Musier-Forsyth

Nucleic Acids Res. 2008 May; 36(8): 2514–2521. Published online 2008 Mar 1. doi: 10.1093/nar/gkn063

PMCID:: PMC2377447

Abstract Article PDF–280K

Select item 22921778.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 18929589.

Restoring species-specific posttransfer editing activity to a synthetase with a defunct editing domain

Julius SternJohn, Sanchita Hati, Paul G. Siliciano, Karin Musier-Forsyth

Proc Natl Acad Sci U S A. 2007 Feb 13; 104(7): 2127–2132. Published online 2007 Feb 5. doi: 10.1073/pnas.0611110104

PMCID:: PMC1892958

Abstract Article PDF–944K

Select item 168148210.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148111.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 148241212.

Transfer RNA aminoacylation: identification of a critical ribose 2'-hydroxyl-base interaction.

L P Yap, K Musier-Forsyth

RNA. 1995 Jun; 1(4): 418–424.

PMCID:: PMC1482412

Summary Page Browse PDF–1.5M

Select item 145705213.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520014.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405