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Select item 63490931.

Nitrogen Starvation Induces Persister Cell Formation in Escherichia coli

Daniel R. Brown

J Bacteriol. 2019 Feb 1; 201(3): e00622-18. Prepublished online 2018 Nov 12. Published online 2019 Jan 11. doi: 10.1128/JB.00622-18

PMCID:: PMC6349093

Abstract Article PDF–407K

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 40665843.

Nitrogen stress response and stringent response are coupled in Escherichia coli

Daniel R. Brown, Geraint Barton, Zhensheng Pan, Martin Buck, Sivaramesh Wigneshweraraj

Nat Commun. 2014; 5: 4115. Published online 2014 Jun 20. doi: 10.1038/ncomms5115

PMCID:: PMC4066584

Abstract Article PDF–845K

Select item 38702434.

Nitrogen and Carbon Status Are Integrated at the Transcriptional Level by the Nitrogen Regulator NtrC In Vivo

Jörg Schumacher, Volker Behrends, Zhensheng Pan, Dan R. Brown, Franziska Heydenreich, Matthew R. Lewis, Mark H. Bennett, Banafsheh Razzaghi, Michal Komorowski, Mauricio Barahona, Michael P. H. Stumpf, Sivaramesh Wigneshweraraj, Jacob G. Bundy, Martin Buck

mBio. 2013 Nov-Dec; 4(6): e00881-13. Published online 2013 Nov 19. doi: 10.1128/mBio.00881-13

PMCID:: PMC3870243

Abstract Article PDF–459K

Select item 30522605.

Using Two-Component Systems and other Bacterial Regulatory Factors for the Fabrication of Synthetic Genetic Devices

Alexander J. Ninfa, Stephen Selinsky, Nicolas Perry, Stephen Atkins, Qi Xiu Song, Avi Mayo, David Arps, Peter Woolf, Mariette R. Atkinson

Methods Enzymol. Author manuscript; available in PMC 2011 Mar 9.

Published in final edited form as: Methods Enzymol. 2007; 422: 488–512. doi: 10.1016/S0076-6879(06)22025-1

PMCID:: PMC3052260

Abstract Article PDF–2.0M

Select item 27862466.

α-Ketoglutarate Controls the Ability of the Escherichia coli PII Signal Transduction Protein To Regulate the Activities of NRII (NtrB) but Does Not Control the Binding of PII to NRII

Peng Jiang, Alexander J. Ninfa

Biochemistry. 2009 Dec 8; 48(48): 11514–11521. Published online 2009 Oct 30. doi: 10.1021/bi901158h

PMCID:: PMC2786246

Abstract Article PDF–1.2M

Select item 27862457.

Sensation and Signaling of α-Ketoglutarate and Adenylylate Energy Charge by the Escherichia coli PII Signal Transduction Protein Require Cooperation of the Three Ligand-Binding Sites within the PII Trimer

Peng Jiang, Alexander J. Ninfa

Biochemistry. 2009 Dec 8; 48(48): 11522–11531. Published online 2009 Oct 30. doi: 10.1021/bi9011594

PMCID:: PMC2786245

Abstract Article PDF–2.0M

Select item 27658758.

Segmented transition pathway of the signaling protein nitrogen regulatory protein C

Ming Lei, Janice Velos, Alexandra Gardino, Alexsandr Kivenson, Martin Karplus, Dorothee Kern

J Mol Biol. Author manuscript; available in PMC 2010 Mar 25.

Published in final edited form as: J Mol Biol. 2009 Sep 25; 392(3): 823–836. Published online 2009 Jul 1. doi: 10.1016/j.jmb.2009.06.065

PMCID:: PMC2765875

Abstract Article PDF–1.6M

Select item 25868309.

System-level mapping of Escherichia coli response regulator dimerization with FRET hybrids

Rong Gao, Yuan Tao, Ann M Stock

Mol Microbiol. 2008 Sep; 69(6): 1358–1372. Published online 2008 Jul 15. doi: 10.1111/j.1365-2958.2008.06355.x

PMCID:: PMC2586830

Abstract Article PDF–420K

Select item 186507810.

Interplay between CRP-cAMP and PII-Ntr systems forms novel regulatory network between carbon metabolism and nitrogen assimilation in Escherichia coli

Xian-Jun Mao, Yi-Xin Huo, Martin Buck, Annie Kolb, Yi-Ping Wang

Nucleic Acids Res. 2007 Mar; 35(5): 1432–1440. Published online 2007 Feb 6. doi: 10.1093/nar/gkl1142

PMCID:: PMC1865078

Abstract Article PDF–1.9M

Select item 168148111.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 147576112.

The structural basis for regulated assembly and function of the transcriptional activator NtrC

Sacha De Carlo, Baoyu Chen, Timothy R. Hoover, Elena Kondrashkina, Eva Nogales, B. Tracy Nixon

Genes Dev. 2006 Jun 1; 20(11): 1485–1495. doi: 10.1101/gad.1418306

PMCID:: PMC1475761

Abstract Article PDF–609K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405