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Items: 1 to 20 of 42

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast
Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu
Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680
PMCID:
PMC8421204
AbstractArticlePDF–2.9M
5.
tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast
Joana F Tavares, Nick K. Davis, Ana Poim, Andreia Reis, Stefanie Kellner, Inês Sousa, Ana R. Soares, Gabriela M R Moura, Peter C Dedon, Manuel Santos
RNA Biol. 2021; 18(4): 563–575. Published online 2020 Sep 17. doi: 10.1080/15476286.2020.1819671
PMCID:
PMC7971265
AbstractArticlePDF–5.8M
6.
A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits
Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister
Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030
PMCID:
PMC7721475
AbstractArticle
7.
Deciphering the reading of the genetic code by near-cognate tRNA
Sandra Blanchet, David Cornu, Isabelle Hatin, Henri Grosjean, Pierre Bertin, Olivier Namy
Proc Natl Acad Sci U S A. 2018 Mar 20; 115(12): 3018–3023. Published online 2018 Mar 5. doi: 10.1073/pnas.1715578115
PMCID:
PMC5866558
AbstractArticlePDF–914K
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
12.
Gene- and Genome-Based Analysis of Significant Codon Patterns in Yeast, Rat and Mice Genomes with the CUT Codon Utilization Tool
Frank Doyle, Andrea Leonardi, Lauren Endres, Scott A. Tenenbaum, Peter C. Dedon, Thomas J. Begley
Methods. Author manuscript; available in PMC 2017 Sep 1.
Published in final edited form as: Methods. 2016 Sep 1; 107: 98–109. Published online 2016 May 28. doi: 10.1016/j.ymeth.2016.05.010
PMCID:
PMC5014648
AbstractArticlePDF–1.2M
13.
Global translational impacts of the loss of the tRNA modification t6A in yeast
Patrick C. Thiaville, Rachel Legendre, Diego Rojas-Benítez, Agnès Baudin-Baillieu, Isabelle Hatin, Guilhem Chalancon, Alvaro Glavic, Olivier Namy, Valérie de Crécy-Lagard
Microb Cell. 2016 Jan 4; 3(1): 29–45. Published online 2015 Dec 18. doi: 10.15698/mic2016.01.473
PMCID:
PMC4717488
AbstractArticlePDF–2.4M
14.
Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation
Wenjun Deng, I. Ramesh Babu, Dan Su, Shanye Yin, Thomas J. Begley, Peter C. Dedon
PLoS Genet. 2015 Dec; 11(12): e1005706. Published online 2015 Dec 15. doi: 10.1371/journal.pgen.1005706
PMCID:
PMC4689569
AbstractArticlePDF–3.8M
15.
The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes
Hasan Tükenmez, Hao Xu, Anders Esberg, Anders S. Byström
Nucleic Acids Res. 2015 Oct 30; 43(19): 9489–9499. Published online 2015 Aug 17. doi: 10.1093/nar/gkv832
PMCID:
PMC4627075
AbstractArticlePDF–2.4M
16.
A Cytosolic Network Suppressing Mitochondria-Mediated Proteostatic Stress and Cell Death
Xiaowen Wang, Xin Jie Chen
Nature. Author manuscript; available in PMC 2016 Feb 27.
Published in final edited form as: Nature. 2015 Aug 27; 524(7566): 481–484. Published online 2015 Jul 20. doi: 10.1038/nature14859
PMCID:
PMC4582408
AbstractArticlePDF–2.3M
17.
Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control
Irene Gallina, Camilla Colding, Peter Henriksen, Petra Beli, Kyosuke Nakamura, Judith Offman, David P. Mathiasen, Sonia Silva, Eva Hoffmann, Anja Groth, Chunaram Choudhary, Michael Lisby
Nat Commun. 2015 Mar 30; 6: 6533. Published online 2015 Mar 30. doi: 10.1038/ncomms7533
PMCID:
PMC4389229
AbstractArticlePDF–3.1M
18.
Loss of Anticodon Wobble Uridine Modifications Affects tRNALys Function and Protein Levels in Saccharomyces cerevisiae
Roland Klassen, Pia Grunewald, Kathrin L. Thüring, Christian Eichler, Mark Helm, Raffael Schaffrath
PLoS One. 2015; 10(3): e0119261. Published online 2015 Mar 6. doi: 10.1371/journal.pone.0119261
PMCID:
PMC4352028
AbstractArticlePDF–2.0M
19.
Sulfur amino acids regulate translational capacity and metabolic homeostasis through modulation of tRNA thiolation
Sunil Laxman, Benjamin M. Sutter, Xi Wu, Sujai Kumar, Xiaofeng Guo, David C. Trudgian, Hamid Mirzaei, Benjamin P. Tu
Cell. Author manuscript; available in PMC 2014 Jul 18.
Published in final edited form as: Cell. 2013 Jul 18; 154(2): 416–429. doi: 10.1016/j.cell.2013.06.043
PMCID:
PMC3757545
AbstractArticlePDF–4.3M
20.
A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae
Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis
BMC Genomics. 2013; 14: 251. Published online 2013 Apr 15. doi: 10.1186/1471-2164-14-251
PMCID:
PMC3637596
AbstractArticlePDF–2.0M

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