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Items: 1 to 20 of 49

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity
Benoît Bragantini, Christophe Charron, Maxime Bourguet, Arnaud Paul, Decebal Tiotiu, Benjamin Rothé, Hélène Marty, Guillaume Terral, Steve Hessmann, Laurence Decourty, Marie-Eve Chagot, Jean-Marc Strub, Séverine Massenet, Edouard Bertrand, Marc Quinternet, Cosmin Saveanu, Sarah Cianférani, Stéphane Labialle, Xavier Manival, Bruno Charpentier
Nat Commun. 2021; 12: 1859. Published online 2021 Mar 25. doi: 10.1038/s41467-021-22077-4
PMCID:
PMC7994586
AbstractArticlePDF–3.4M
6.
Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae
Joshua J. Black, Richa Sardana, Ezzeddine W. Elmir, Arlen W. Johnson
PLoS Genet. 2020 Dec; 16(12): e1009215. Published online 2020 Dec 11. doi: 10.1371/journal.pgen.1009215
PMCID:
PMC7758049
AbstractArticlePDF–4.9M
7.
The Exosome Subunit Rrp44 Plays a Direct Role in RNA Substrate Recognition
Claudia Schneider, James T. Anderson, David Tollervey
Mol Cell. Author manuscript; available in PMC 2021 Jun 11.
Published in final edited form as: Mol Cell. 2007 Jul 20; 27(2): 324–31. doi: 10.1016/j.molcel.2007.06.006
PMCID:
PMC7610968
AbstractArticlePDF–1.4M
8.
The ribosome assembly factor Nop53 controls association of the RNA exosome with pre-60S particles in yeast
Leidy Paola P. Cepeda, Felipe F. M. Bagatelli, Renata M. Santos, Marlon D. M. Santos, Fabio C. S. Nogueira, Carla C. Oliveira
J Biol Chem. 2019 Dec 13; 294(50): 19365–19380. Published online 2019 Oct 29. doi: 10.1074/jbc.RA119.010193
PMCID:
PMC6916480
AbstractArticlePDF–5.0M
9.
Utp14 interaction with the small subunit processome
Joshua J. Black, Zhaohui Wang, Lisa M. Goering, Arlen W. Johnson
RNA. 2018 Sep; 24(9): 1214–1228. doi: 10.1261/rna.066373.118
PMCID:
PMC6097655
AbstractArticlePDF–11M
10.
Structural and functional analysis of ribosome assembly factor Efg1
Sheng Shu, Keqiong Ye
Nucleic Acids Res. 2018 Feb 28; 46(4): 2096–2106. Published online 2018 Jan 18. doi: 10.1093/nar/gky011
PMCID:
PMC5829643
AbstractArticlePDF–7.8M
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
Def1 interacts with TFIIH and modulates RNA polymerase II transcription
Nivedita Damodaren, Trevor Van Eeuwen, Joanna Zamel, Enrique Lin-Shiao, Nir Kalisman, Kenji Murakami
Proc Natl Acad Sci U S A. 2017 Dec 12; 114(50): 13230–13235. Published online 2017 Nov 27. doi: 10.1073/pnas.1707955114
PMCID:
PMC5740667
AbstractArticlePDF–1.2M
13.
Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly
Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt
Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4
PMCID:
PMC5738357
AbstractArticlePDF–3.1M
14.
Reconstitution of the complete pathway of ITS2 processing at the pre-ribosome
Lisa Fromm, Sebastian Falk, Dirk Flemming, Jan Michael Schuller, Matthias Thoms, Elena Conti, Ed Hurt
Nat Commun. 2017; 8: 1787. Published online 2017 Nov 27. doi: 10.1038/s41467-017-01786-9
PMCID:
PMC5702609
AbstractArticlePDF–1.8M
15.
Mpp6 Incorporation in the Nuclear Exosome Contributes to RNA Channeling through the Mtr4 Helicase
Sebastian Falk, Fabien Bonneau, Judith Ebert, Alexander Kögel, Elena Conti
Cell Rep. 2017 Sep 5; 20(10): 2279–2286. Published online 2017 Sep 5. doi: 10.1016/j.celrep.2017.08.033
PMCID:
PMC5603729
AbstractArticle
16.
Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae
Fernando A. Gonzales-Zubiate, Ellen K. Okuda, Julia P. C. Da Cunha, Carla Columbano Oliveira
J Biol Chem. 2017 Jul 21; 292(29): 12267–12284. Published online 2017 May 24. doi: 10.1074/jbc.M116.772376
PMCID:
PMC5519375
AbstractArticlePDF–3.2M
17.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
18.
CryoEM structure of yeast cytoplasmic exosome complex
Jun-Jie Liu, Chu-Ya Niu, Yao Wu, Dan Tan, Yang Wang, Ming-Da Ye, Yang Liu, Wenwei Zhao, Ke Zhou, Quan-Sheng Liu, Junbiao Dai, Xuerui Yang, Meng-Qiu Dong, Niu Huang, Hong-Wei Wang
Cell Res. 2016 Jul; 26(7): 822–837. Published online 2016 May 13. doi: 10.1038/cr.2016.56
PMCID:
PMC5129878
AbstractArticlePDF–12M
19.
Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex
Eva Kowalinski, Alexander Kögel, Judith Ebert, Peter Reichelt, Elisabeth Stegmann, Bianca Habermann, Elena Conti
Mol Cell. 2016 Jul 7; 63(1): 125–134. doi: 10.1016/j.molcel.2016.05.028
PMCID:
PMC4942675
AbstractArticle
20.
A strategy for dissecting the architectures of native macromolecular assemblies
Yi Shi, Riccardo Pellarin, Peter C. Fridy, Javier Fernandez-Martinez, Mary K. Thompson, Yinyin Li, Qing Jun Wang, Andrej Sali, Michael P. Rout, Brian T. Chait
Nat Methods. Author manuscript; available in PMC 2016 Mar 22.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1135–1138. Published online 2015 Oct 5. doi: 10.1038/nmeth.3617
PMCID:
PMC4803312
AbstractArticlePDF–873K

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