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Select item 112845631.

Exo1 cooperates with Tel1/ATM in promoting recombination events at DNA replication forks

Michela Galli, Chiara Frigerio, Chiara Vittoria Colombo, Erika Casari, Maria Pia Longhese, Michela Clerici

iScience. 2024 Aug 16; 27(8): 110410. Published online 2024 Jun 28. doi: 10.1016/j.isci.2024.110410

PMCID:: PMC11284563

Abstract Article PDF–5.4M

Select item 112832332.

A comparative analysis of NADPH supply strategies in Saccharomyces cerevisiae: Production of d-xylitol from d-xylose as a case study

Priti Regmi, Melanie Knesebeck, Eckhard Boles, Dirk Weuster-Botz, Mislav Oreb

Metab Eng Commun. 2024 Dec; 19: e00245. Published online 2024 Jul 5. doi: 10.1016/j.mec.2024.e00245

PMCID:: PMC11283233

Abstract Article PDF–4.9M

Select item 109097483.

Loss of Dna2 fidelity results in decreased Exo1-mediated resection at DNA double-strand breaks

Aditya Mojumdar, Courtney Granger, Martine Lunke, Jennifer A. Cobb

J Biol Chem. 2024 Mar; 300(3): 105708. Published online 2024 Feb 2. doi: 10.1016/j.jbc.2024.105708

PMCID:: PMC10909748

Abstract Article PDF–2.9M

Select item 108724774.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001385.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105517006.

Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability

Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai

Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108

PMCID:: PMC10551700

Abstract Article PDF–3.7M

Select item 102333687.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 99768778.

The Ku complex promotes DNA end-bridging and this function is antagonized by Tel1/ATM kinase

Carlo Rinaldi, Paolo Pizzul, Erika Casari, Marco Mangiagalli, Renata Tisi, Maria Pia Longhese

Nucleic Acids Res. 2023 Feb 28; 51(4): 1783–1802. Published online 2023 Feb 10. doi: 10.1093/nar/gkad062

PMCID:: PMC9976877

Abstract Article PDF–6.3M

Select item 96309869.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 920981110.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 868275611.

Mapping yeast mitotic 5′ resection at base resolution reveals the sequence and positional dependence of nucleases in vivo

Dominic Bazzano, Stephanie Lomonaco, Thomas E Wilson

Nucleic Acids Res. 2021 Dec 16; 49(22): 12607–12621. Published online 2021 Jul 15. doi: 10.1093/nar/gkab597

PMCID:: PMC8682756

Abstract Article PDF–4.9M

Select item 866448012.

Suppression of telomere capping defects of Saccharomyces cerevisiae yku70 and yku80 mutants by telomerase

Cory L Holland, Brian A Sanderson, James K Titus, Monica F Weis, Angelica M Riojas, Eric Malczewskyj, Brian M Wasko, L Kevin Lewis

G3 (Bethesda) 2021 Dec; 11(12): jkab359. Published online 2021 Oct 13. doi: 10.1093/g3journal/jkab359

PMCID:: PMC8664480

Abstract Article PDF–1023K

Select item 861683013.

Mutagenic repair of a ZFN-induced double-strand break in yeast: Effects of cleavage site sequence and spacer size

Samantha Shaltz, Sue Jinks-Robertson

DNA Repair (Amst) Author manuscript; available in PMC 2022 Dec 1.

Published in final edited form as: DNA Repair (Amst). 2021 Dec; 108: 103228. Published online 2021 Sep 16. doi: 10.1016/j.dnarep.2021.103228

PMCID:: PMC8616830

Abstract Article PDF–1.7M

Select item 857106314.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6