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Items: 1 to 20 of 27

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Prp5−Spt8/Spt3 interaction mediates a reciprocal coupling between splicing and transcription
Wei Shao, Zhan Ding, Zeng-Zhang Zheng, Ji-Jia Shen, Yu-Xian Shen, Jia Pu, Yu-Jie Fan, Charles C Query, Yong-Zhen Xu
Nucleic Acids Res. 2020 Jun 19; 48(11): 5799–5813. Published online 2020 May 13. doi: 10.1093/nar/gkaa311
PMCID:
PMC7293005
AbstractArticlePDF–5.7M
5.
Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM–ULM interaction
Jason Talkish, Haller Igel, Oarteze Hunter, Steven W. Horner, Nazish N. Jeffery, Justin R. Leach, Jermaine L. Jenkins, Clara L. Kielkopf, Manuel Ares
RNA. 2019 Aug; 25(8): 1020–1037. doi: 10.1261/rna.070649.119
PMCID:
PMC6633205
AbstractArticlePDF–5.9M
6.
Selective defects in gene expression control genome instability in yeast splicing mutants
Annie S. Tam, Tianna S. Sihota, Karissa L. Milbury, Anni Zhang, Veena Mathew, Peter C. Stirling
Mol Biol Cell. 2019 Jan 15; 30(2): 191–200. doi: 10.1091/mbc.E18-07-0439
PMCID:
PMC6589566
AbstractArticlePDF–5.1M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
SF3b1 mutations associated with myelodysplastic syndromes alter the fidelity of branchsite selection in yeast
Tucker J. Carrocci, Douglas M. Zoerner, Joshua C. Paulson, Aaron A. Hoskins
Nucleic Acids Res. 2017 May 5; 45(8): 4837–4852. Published online 2017 Jan 6. doi: 10.1093/nar/gkw1349
PMCID:
PMC5416834
AbstractArticlePDF–5.6M
10.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
11.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
12.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
13.
Conformational dynamics of stem II of the U2 snRNA
Margaret L. Rodgers, U. Sandy Tretbar, Alexander Dehaven, Amir A. Alwan, George Luo, Hannah M. Mast, Aaron A. Hoskins
RNA. 2016 Feb; 22(2): 225–236. doi: 10.1261/rna.052233.115
PMCID:
PMC4712673
AbstractArticlePDF–546K
14.
A Splicing-Dependent Transcriptional Checkpoint Associated with Prespliceosome Formation
Keerthi T. Chathoth, J. David Barrass, Shaun Webb, Jean D. Beggs
Mol Cell. 2014 Mar 6; 53(5): 779–790. doi: 10.1016/j.molcel.2014.01.017
PMCID:
PMC3988880
AbstractArticlePDF–1.1M
15.
The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing
Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie
PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101
PMCID:
PMC3510044
AbstractArticlePDF–3.4M
16.
Functional Analysis With a Barcoder Yeast Gene Overexpression System
Alison C. Douglas, Andrew M. Smith, Sara Sharifpoor, Zhun Yan, Tanja Durbic, Lawrence E. Heisler, Anna Y. Lee, Owen Ryan, Hendrikje Göttert, Anu Surendra, Dewald van Dyk, Guri Giaever, Charles Boone, Corey Nislow, Brenda J. Andrews
G3 (Bethesda) 2012 Oct; 2(10): 1279–1289. Published online 2012 Oct 1. doi: 10.1534/g3.112.003400
PMCID:
PMC3464120
AbstractArticlePDF–2.5M
17.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
18.
Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects
Stephen Gregory Addinall, Eva-Maria Holstein, Conor Lawless, Min Yu, Kaye Chapman, A. Peter Banks, Hien-Ping Ngo, Laura Maringele, Morgan Taschuk, Alexander Young, Adam Ciesiolka, Allyson Lurena Lister, Anil Wipat, Darren James Wilkinson, David Lydall
PLoS Genet. 2011 Apr; 7(4): e1001362. Published online 2011 Apr 7. doi: 10.1371/journal.pgen.1001362
PMCID:
PMC3072368
AbstractArticlePDF–4.0M
19.
An Investigation of a Role for U2 snRNP Spliceosomal Components in Regulating Transcription
Susannah L. McKay, Tracy L. Johnson
PLoS One. 2011; 6(1): e16077. Published online 2011 Jan 24. doi: 10.1371/journal.pone.0016077
PMCID:
PMC3025917
AbstractArticlePDF–1.3M
20.
Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing
Rhonda Perriman, Manuel Ares, Jr.
Mol Cell. Author manuscript; available in PMC 2011 May 14.
Published in final edited form as: Mol Cell. 2010 May 14; 38(3): 416–427. doi: 10.1016/j.molcel.2010.02.036
PMCID:
PMC2872779
AbstractArticlePDF–1.2M

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