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Items: 1 to 20 of 92

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
AbstractArticlePDF–1.7M
2.
ESCRT-dependent protein sorting is required for the viability of yeast clathrin-mediated endocytosis mutants
Kyle Hoban, Samantha Y. Lux, Joanna Poprawski, Yorke Zhang, James Shepherdson, Pedro G. Castiñeira, Sanjana Pesari, Tony Yao, Derek C. Prosser, Carolyn Norris, Beverly Wendland
Traffic. Author manuscript; available in PMC 2024 Sep 5.
Published in final edited form as: Traffic. 2020 Jun; 21(6): 430–450. doi: 10.1111/tra.12731
PMCID:
PMC11376963
AbstractArticlePDF–2.9M
3.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
6.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
9.
Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis
Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.
J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155
PMCID:
PMC8576917
AbstractArticlePDF–7.4M
10.
Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast
Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu
Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680
PMCID:
PMC8421204
AbstractArticlePDF–2.9M
11.
Ist2 recruits the lipid transporters Osh6/7 to ER–PM contacts to maintain phospholipid metabolism
Andrew King On Wong, Barry Paul Young, Christopher J.R. Loewen
J Cell Biol. 2021 Sep 6; 220(9): e201910161. Published online 2021 Jul 14. doi: 10.1083/jcb.201910161
PMCID:
PMC8282664
AbstractArticlePDF–7.6M
12.
Design principles of the ESCRT-III Vps24-Vps2 module
Sudeep Banjade, Yousuf H Shah, Shaogeng Tang, Scott D Emr
eLife. 2021; 10: e67709. Published online 2021 May 24. doi: 10.7554/eLife.67709
PMCID:
PMC8143795
AbstractArticlePDF–4.6M
13.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
14.
ESCRT machinery plays a role in microautophagy in yeast
Shamsul Morshed, Most Naoshia Tasnin, Takashi Ushimaru
BMC Mol Cell Biol. 2020; 21: 70. Published online 2020 Oct 7. doi: 10.1186/s12860-020-00314-w
PMCID:
PMC7542719
AbstractArticlePDF–1.8M
15.
Structure and assembly of ESCRT-III helical Vps24 filaments
Stefan T. Huber, Siavash Mostafavi, Simon A. Mortensen, Carsten Sachse
Sci Adv. 2020 Aug; 6(34): eaba4897. Published online 2020 Aug 19. doi: 10.1126/sciadv.aba4897
PMCID:
PMC7438092
AbstractArticlePDF–1.3M
16.
ESCRT-III and ER–PM contacts maintain lipid homeostasis
Jeff R. Jorgensen, Reika Tei, Jeremy M. Baskin, Agnès H. Michel, Benoît Kornmann, Scott D. Emr
Mol Biol Cell. 2020 Jun 1; 31(12): 1302–1313. doi: 10.1091/mbc.E20-01-0061
PMCID:
PMC7353149
AbstractArticlePDF–2.9M
17.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
18.
The ubiquitin hydrolase Doa4 directly binds Snf7 to inhibit recruitment of ESCRT-III remodeling factors in S. cerevisiae
Dalton Buysse, Anna-Katharina Pfitzner, Matt West, Aurélien Roux, Greg Odorizzi
J Cell Sci. 2020 Apr 15; 133(8): jcs241455. Published online 2020 Apr 28. doi: 10.1242/jcs.241455
PMCID:
PMC7197871
AbstractArticle
19.
Electrostatic lateral interactions drive ESCRT-III heteropolymer assembly
Sudeep Banjade, Shaogeng Tang, Yousuf H Shah, Scott D Emr
eLife. 2019; 8: e46207. Published online 2019 Jun 27. doi: 10.7554/eLife.46207
PMCID:
PMC6663469
AbstractArticlePDF–3.5M
20.
An ESCRT-LEM protein surveillance system is poised to directly monitor the nuclear envelope and nuclear transport system
David J Thaller, Matteo Allegretti, Sapan Borah, Paolo Ronchi, Martin Beck, C Patrick Lusk
eLife. 2019; 8: e45284. Published online 2019 Apr 3. doi: 10.7554/eLife.45284
PMCID:
PMC6461442
AbstractArticlePDF–17M

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