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Select item 114465481.

The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

Moran Kelbert, Antonio Jordán-Pla, Lola de Miguel-Jiménez, José García-Martínez, Michael Selitrennik, Adi Guterman, Noa Henig, Sander Granneman, José E Pérez-Ortín, Sebastián Chávez, Mordechai Choder

eLife. 2024; 12: RP90766. Published online 2024 Oct 2. doi: 10.7554/eLife.90766

PMCID:: PMC11446548

Abstract Article PDF–7.1M

Select item 114236782.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 113578573.

Ccr4-not ubiquitin ligase signaling regulates ribosomal protein homeostasis and inhibits 40S ribosomal autophagy

Daniel L. Johnson, Ravinder Kumar, David Kakhniashvili, Lawrence M. Pfeffer, R. Nicholas Laribee

J Biol Chem. 2024 Aug; 300(8): 107582. Published online 2024 Jul 16. doi: 10.1016/j.jbc.2024.107582

PMCID:: PMC11357857

Abstract Article PDF–3.9M

Select item 111461184.

Modulation by flavonoids of cell multidrug resistance mediated by P-glycoprotein and related ABC transporters

A. Di Pietro, G. Conseil, J.M. Pérez-Victoria, G. Dayan, H. Baubichon-Cortay, D. Trompier, E. Steinfels, J.-M. Jault, H. de Wet, M. Maitrejean, G. Comte, A. Boumendjel, A.-M. Mariotte, C. Dumontet, D.B. McIntosh, A. Goffeau, S. Castanys, F. Gamarro, D. Barron

Cell Mol Life Sci. 2002 Feb; 59(2): 307–322. Published online 2014 Apr 30. doi: 10.1007/s00018-002-8424-8

PMCID:: PMC11146118

Abstract Article PDF–205K

Select item 110241855.

The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis

Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger

Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7

PMCID:: PMC11024185

Abstract Article PDF–7.4M

Select item 108724776.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107988587.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001388.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102977009.

The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions

Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman

Mol Cell. Author manuscript; available in PMC 2024 Jun 15.

Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021

PMCID:: PMC10297700

Abstract Article PDF–2.0M

Select item 989455510.

Yeast derlin Dfm1 employs a chaperone-like function to resolve misfolded membrane protein stress

Rachel Kandel, Jasmine Jung, Della Syau, Tiffany Kuo, Livia Songster, Casey Horn, Claire Chapman, Analine Aguayo, Sascha Duttke, Christopher Benner, Sonya E. Neal

PLoS Biol. 2023 Jan; 21(1): e3001950. Published online 2023 Jan 23. doi: 10.1371/journal.pbio.3001950

PMCID:: PMC9894555

Abstract Article PDF–3.3M

Select item 983634811.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 920981112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 900095613.

The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast

Houqing Yu, Roarke A Kamber, Vladimir Denic

eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531

PMCID:: PMC9000956

Abstract Article PDF–1.0M

Select item 886797314.

Repurposing the FDA‐approved anticancer agent ponatinib as a fluconazole potentiator by suppression of multidrug efflux and Pma1 expression in a broad spectrum of yeast species

Lin Liu, Tong Jiang, Jia Zhou, Yikun Mei, Jinyang Li, Jingcong Tan, Luqi Wei, Jingquan Li, Yibing Peng, Changbin Chen, Ning‐Ning Liu, Hui Wang

Microb Biotechnol. 2022 Feb; 15(2): 482–498. Published online 2021 May 6. doi: 10.1111/1751-7915.13814

PMCID:: PMC8867973

Abstract Article PDF–3.6M

Select item 866947915.

Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput

Ludimila Dias Almeida, Ali Salim Faraj Silva, Daniel Calixto Mota, Adrielle Ayumi Vasconcelos, Antônio Pedro Camargo, Gabriel Silva Pires, Monique Furlan, Helena Martins Ribeiro da Cunha Freire, Angélica Hollunder Klippel, Suélen Fernandes Silva, Cleslei Fernando Zanelli, Marcelo Falsarella Carazzolle, Stephen G. Oliver, Elizabeth Bilsland

mBio. 2021 Nov-Dec; 12(6): e03221-21. Published online 2021 Dec 14. doi: 10.1128/mbio.03221-21

PMCID:: PMC8669479

Abstract Article PDF–5.3M

Select item 864175216.

Derlin rhomboid pseudoproteases employ substrate engagement and lipid distortion to enable the retrotranslocation of ERAD membrane substrates

Anahita Nejatfard, Nicholas Wauer, Satarupa Bhaduri, Adam Conn, Saroj Gourkanti, Narinderbir Singh, Tiffany Kuo, Rachel Kandel, Rommie E. Amaro, Sonya E. Neal

Cell Rep. Author manuscript; available in PMC 2021 Dec 3.

Published in final edited form as: Cell Rep. 2021 Oct 19; 37(3): 109840. doi: 10.1016/j.celrep.2021.109840

Correction in:: Cell Rep. 2022 Mar 22; 38(12): 110578.

PMCID:: PMC8641752

Abstract Article PDF–2.8M

Select item 857694017.

RPD3 and UME6 are involved in the activation of PDR5 transcription and pleiotropic drug resistance in ρ⁰ cells of Saccharomyces cerevisiae

Yoichi Yamada

BMC Microbiol. 2021; 21: 311. Published online 2021 Nov 9. doi: 10.1186/s12866-021-02373-1

PMCID:: PMC8576940

Abstract Article PDF–1.5M

Select item 842141118.

Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5

Andrzej Harris, Manuel Wagner, Dijun Du, Stefanie Raschka, Lea-Marie Nentwig, Holger Gohlke, Sander H. J. Smits, Ben F. Luisi, Lutz Schmitt

Nat Commun. 2021; 12: 5254. Published online 2021 Sep 6. doi: 10.1038/s41467-021-25574-8

PMCID:: PMC8421411

Abstract Article PDF–8.8M

Select item 832515619.

Nuclear envelope budding is a response to cellular stress

Dimitra Panagaki, Jacob T. Croft, Katharina Keuenhof, Lisa Larsson Berglund, Stefanie Andersson, Verena Kohler, Sabrina Büttner, Markus J. Tamás, Thomas Nyström, Richard Neutze, Johanna L. Höög

Proc Natl Acad Sci U S A. 2021 Jul 27; 118(30): e2020997118. Published online 2021 Jul 21. doi: 10.1073/pnas.2020997118