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Items: 1 to 20 of 28

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Widely spaced and divergent inverted repeats become a potent source of chromosomal rearrangements in long single-stranded DNA regions
Anissia Ait Saada, Wenying Guo, Alex B Costa, Jiaxin Yang, Jianrong Wang, Kirill S Lobachev
Nucleic Acids Res. 2023 May 8; 51(8): 3722–3734. Published online 2023 Mar 15. doi: 10.1093/nar/gkad153
PMCID:
PMC10164571
AbstractArticlePDF–4.4M
3.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
SAW1 is increasingly required to recruit Rad10 as SSA flap-length increases from 20 to 50 bases in single-strand annealing in S. cerevisiae
Rowen Jane Odango, Juan Camberos, Fred Erick Fregoso, Paula L. Fischhaber
Biochem Biophys Rep. 2021 Dec; 28: 101125. Published online 2021 Sep 27. doi: 10.1016/j.bbrep.2021.101125
PMCID:
PMC8481969
AbstractArticlePDF–894K
6.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
7.
Coordination of Rad1–Rad10 interactions with Msh2–Msh3, Saw1 and RPA is essential for functional 3′ non-homologous tail removal
Robin Eichmiller, Melisa Medina-Rivera, Rachel DeSanto, Eugen Minca, Christopher Kim, Cory Holland, Ja-Hwan Seol, Megan Schmit, Diane Oramus, Jessica Smith, Ignacio F Gallardo, Ilya J Finkelstein, Sang Eun Lee, Jennifer A Surtees
Nucleic Acids Res. 2018 Jun 1; 46(10): 5075–5096. Published online 2018 Apr 6. doi: 10.1093/nar/gky254
PMCID:
PMC6007489
AbstractArticlePDF–2.8M
8.
Distinct roles of XPF-ERCC1 and Rad1-Rad10-Saw1 in replication-coupled and uncoupled inter-strand crosslink repair
Ja-Hwan Seol, Cory Holland, Xiaolei Li, Christopher Kim, Fuyang Li, Melisa Medina-Rivera, Robin Eichmiller, Ignacio F. Gallardo, Ilya J. Finkelstein, Paul Hasty, Eun Yong Shim, Jennifer A. Surtees, Sang Eun Lee
Nat Commun. 2018; 9: 2025. Published online 2018 May 23. doi: 10.1038/s41467-018-04327-0
PMCID:
PMC5966407
AbstractArticlePDF–1.5M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
12.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
13.
Combined Action of Histone Reader Modules Regulates NuA4 Local Acetyltransferase Function but Not Its Recruitment on the Genome
Anne-Lise Steunou, Myriam Cramet, Dorine Rossetto, Maria J. Aristizabal, Nicolas Lacoste, Simon Drouin, Valérie Côté, Eric Paquet, Rhea T. Utley, Nevan Krogan, François Robert, Michael S. Kobor, Jacques Côté
Mol Cell Biol. 2016 Nov 15; 36(22): 2768–2781. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00112-16
PMCID:
PMC5086519
AbstractArticlePDF–2.3M
14.
Saw1 Localizes to Repair Sites but is not Required for Recruitment of Rad10 to Repair Intermediates Bearing Short Non-Homologous 3′ Flaps during Single-Strand Annealing in S. cerevisiae
Melina Mardirosian, Linette Nalbandyan, Aaron D. Miller, Claire Phan, Eric P. Kelson, Paula L. Fischhaber
Mol Cell Biochem. Author manuscript; available in PMC 2017 Jan 1.
Published in final edited form as: Mol Cell Biochem. 2016 Jan; 412(0): 131–139. Published online 2015 Dec 23. doi: 10.1007/s11010-015-2616-7
PMCID:
PMC4727451
AbstractArticlePDF–1.5M
15.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
16.
A Versatile Scaffold Contributes to Damage Survival via Sumoylation and Nuclease Interactions
Prabha Sarangi, Veronika Altmannova, Cory Holland, Zdenka Bartosova, Fanfan Hao, Dorothea Anrather, Gustav Ammerer, Sang Eun Lee, Lumir Krejci, Xiaolan Zhao
Cell Rep. Author manuscript; available in PMC 2014 Dec 31.
Published in final edited form as: Cell Rep. 2014 Oct 9; 9(1): 143–152. Published online 2014 Sep 25. doi: 10.1016/j.celrep.2014.08.054
PMCID:
PMC4280569
AbstractArticlePDF–1.6M
17.
Sumoylation of the Rad1 nuclease promotes DNA repair and regulates its DNA association
Prabha Sarangi, Zdenka Bartosova, Veronika Altmannova, Cory Holland, Melita Chavdarova, Sang Eun Lee, Lumir Krejci, Xiaolan Zhao
Nucleic Acids Res. 2014 Jun 1; 42(10): 6393–6404. Published online 2014 Apr 20. doi: 10.1093/nar/gku300
PMCID:
PMC4041466
AbstractArticlePDF–1024K
18.
SAW1 is Required for SDSA Double-Strand Break Repair in S. cerevisiae
Graciel Diamante, Claire Phan, Angie S. Celis, Jonas Krueger, Eric P. Kelson, Paula L. Fischhaber
Biochem Biophys Res Commun. Author manuscript; available in PMC 2015 Mar 14.
Published in final edited form as: Biochem Biophys Res Commun. 2014 Mar 14; 445(3): 602–607. Published online 2014 Feb 22. doi: 10.1016/j.bbrc.2014.02.048
PMCID:
PMC4001863
AbstractArticlePDF–1.0M
19.
Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast Saccharomyces cerevisiae
Katayoun Omidi, Mohsen Hooshyar, Matthew Jessulat, Bahram Samanfar, Megan Sanders, Daniel Burnside, Sylvain Pitre, Andrew Schoenrock, Jianhua Xu, Mohan Babu, Ashkan Golshani
PLoS One. 2014; 9(1): e87248. Published online 2014 Jan 31. doi: 10.1371/journal.pone.0087248
PMCID:
PMC3909046
AbstractArticlePDF–796K
20.
Role of Saw1 in Rad1/Rad10 complex assembly at recombination intermediates in budding yeast
Fuyang Li, Junachao Dong, Robin Eichmiller, Cory Holland, Eugen Minca, Rohit Prakash, Patrick Sung, Eun Yong Shim, Jennifer A Surtees, Sang Eun Lee
EMBO J. 2013 Feb 6; 32(3): 461–472. Published online 2013 Jan 8. doi: 10.1038/emboj.2012.345
PMCID:
PMC3595435
AbstractArticlePDF–924K

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