PMC Links for GEO Profiles (Select 45348648) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 75074024.

Systematic analysis of bypass suppression of essential genes

Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone

Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828

PMCID:: PMC7507402

Abstract Article PDF–1.9M

Select item 62157135.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 59592536.

Defining essential elements and genetic interactions of the yeast Lsm2–8 ring and demonstration that essentiality of Lsm2–8 is bypassed via overexpression of U6 snRNA or the U6 snRNP subunit Prp24

Allen J. Roth, Stewart Shuman, Beate Schwer

RNA. 2018 Jun; 24(6): 853–864. doi: 10.1261/rna.066175.118

PMCID:: PMC5959253

Abstract Article PDF–7.4M

Select item 59315187.

Architecture of the U6 snRNP reveals specific recognition of 3′-end processed U6 snRNA

Eric J. Montemayor, Allison L. Didychuk, Allyson D. Yake, Gurnimrat K. Sidhu, David A. Brow, Samuel E. Butcher

Nat Commun. 2018; 9: 1749. Published online 2018 May 1. doi: 10.1038/s41467-018-04145-4

PMCID:: PMC5931518

Abstract Article PDF–2.1M

Select item 59225288.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319

PMCID:: PMC5922528

Abstract Article PDF–7.1M

Select item 57653599.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188510.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 559127711.

Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities

Allison L. Didychuk, Eric J. Montemayor, Tucker J. Carrocci, Andrew T. DeLaitsch, Stefani E. Lucarelli, William M. Westler, David A. Brow, Aaron A. Hoskins, Samuel E. Butcher

Nat Commun. 2017; 8: 497. Published online 2017 Sep 8. doi: 10.1038/s41467-017-00484-w

PMCID:: PMC5591277

Abstract Article PDF–2.3M

Select item 476457312.

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning

Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich

eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466

PMCID:: PMC4764573

Abstract Article PDF–5.7M

Select item 475682513.

Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly

Allison L. Didychuk, Eric J. Montemayor, David A. Brow, Samuel E. Butcher

Nucleic Acids Res. 2016 Feb 18; 44(3): 1398–1410. Published online 2015 Dec 15. doi: 10.1093/nar/gkv1374

PMCID:: PMC4756825

Abstract Article PDF–9.3M

Select item 440879914.

Spliceosome assembly in the absence of stable U4/U6 RNA pairing

Jordan E. Burke, Samuel E. Butcher, David A. Brow

RNA. 2015 May; 21(5): 923–934. doi: 10.1261/rna.048421.114

PMCID:: PMC4408799

Abstract Article PDF–1.1M

Select item 440878315.

Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull

Margaret L. Rodgers, Joshua Paulson, Aaron A. Hoskins

RNA. 2015 May; 21(5): 1031–1041. doi: 10.1261/rna.047845.114

PMCID:: PMC4408783

Abstract Article PDF–718K

Select item 414177316.

Core structure of the U6 snRNP at 1.7 Å resolution

Eric J. Montemayor, Elizabeth C. Curran, Hong Hong Liao, Kristie L. Andrews, Christine N. Treba, Samuel E. Butcher, David A. Brow

Nat Struct Mol Biol. Author manuscript; available in PMC 2014 Dec 1.

Published in final edited form as: Nat Struct Mol Biol. 2014 Jun; 21(6): 544–551. Published online 2014 May 18. doi: 10.1038/nsmb.2832

PMCID:: PMC4141773

Abstract Article PDF–2.1M

Select item 356498717.

Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork

Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter

G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754

PMCID:: PMC3564987

Abstract Article PDF–2.3M

Select item 318494718.

Regulation of Septin Dynamics by the Saccharomyces cerevisiae Lysine Acetyltransferase NuA4

Leslie Mitchell, Andrea Lau, Jean-Philippe Lambert, Hu Zhou, Ying Fong, Jean-François Couture, Daniel Figeys, Kristin Baetz

PLoS One. 2011; 6(10): e25336. Published online 2011 Oct 3. doi: 10.1371/journal.pone.0025336

PMCID:: PMC3184947

Abstract Article PDF–3.8M

Select item 317720119.

A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop

Stephen Martin-Tumasz, Ashley C. Richie, Lawrence J. Clos, II, David A. Brow, Samuel E. Butcher

Nucleic Acids Res. 2011 Sep; 39(17): 7837–7847. Published online 2011 Jun 7. doi: 10.1093/nar/gkr455

PMCID:: PMC3177201

Abstract Article PDF–8.8M

Select item 297230820.

¹H, ¹³C and ¹⁵N resonance assignments of a ribonucleoprotein complex consisting of Prp24-RRM2 bound to a fragment of U6 RNA

Stephen Martin-Tumasz, Samuel E. Butcher

Biomol NMR Assign. Author manuscript; available in PMC 2010 Nov 3.

Published in final edited form as: Biomol NMR Assign. 2009 Dec; 3(2): 227–230. Published online 2009 Aug 20. doi: 10.1007/s12104-009-9181-5

PMCID:: PMC2972308

Abstract Article PDF–56K

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