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Items: 1 to 20 of 28

1.
Assessment of community efforts to advance network-based prediction of protein–protein interactions
Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu
Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7
PMCID:
PMC10033937
AbstractArticlePDF–1.5M
2.
Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy
Xin Sun, Yuhan Shu, Guiqin Ye, Caixia Wu, Mengting Xu, Ruilan Gao, Dongsheng Huang, Jianbin Zhang
Acta Pharm Sin B. 2022 Feb; 12(2): 838–852. Published online 2021 Jul 21. doi: 10.1016/j.apsb.2021.07.003
PMCID:
PMC8897022
AbstractArticlePDF–3.0M
3.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
4.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
5.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
6.
Crystal Structure and Molecular Imaging of the Nav Channel β3 Subunit Indicates a Trimeric Assembly
Sivakumar Namadurai, Dilshan Balasuriya, Rajit Rajappa, Martin Wiemhöfer, Katherine Stott, Jurgen Klingauf, J. Michael Edwardson, Dimitri Y. Chirgadze, Antony P. Jackson
J Biol Chem. 2014 Apr 11; 289(15): 10797–10811. Published online 2014 Feb 24. doi: 10.1074/jbc.M113.527994
PMCID:
PMC4036194
AbstractArticlePDF–4.6M
7.
Genome-wide Association Study Identifies Multiple Risk Loci for Chronic Lymphocytic Leukemia
Sonja I. Berndt, Christine F. Skibola, Vijai Joseph, Nicola J. Camp, Alexandra Nieters, Zhaoming Wang, Wendy Cozen, Alain Monnereau, Sophia S. Wang, Rachel S. Kelly, Qing Lan, Lauren R. Teras, Nilanjan Chatterjee, Charles C. Chung, Meredith Yeager, Angela R. Brooks-Wilson, Patricia Hartge, Mark P. Purdue, Brenda M. Birmann, Bruce K. Armstrong, Pierluigi Cocco, Yawei Zhang, Gianluca Severi, Anne Zeleniuch-Jacquotte, Charles Lawrence, Laurie Burdette, Jeffrey Yuenger, Amy Hutchinson, Kevin B. Jacobs, Timothy G. Call, Tait D. Shanafelt, Anne J. Novak, Neil E. Kay, Mark Liebow, Alice H. Wang, Karin E Smedby, Hans-Olov Adami, Mads Melbye, Bengt Glimelius, Ellen T. Chang, Martha Glenn, Karen Curtin, Lisa A. Cannon-Albright, Brandt Jones, W. Ryan Diver, Brian K. Link, George J. Weiner, Lucia Conde, Paige M. Bracci, Jacques Riby, Elizabeth A. Holly, Martyn T. Smith, Rebecca D. Jackson, Lesley F. Tinker, Yolanda Benavente, Nikolaus Becker, Paolo Boffetta, Paul Brennan, Lenka Foretova, Marc Maynadie, James McKay, Anthony Staines, Kari G. Rabe, Sara J. Achenbach, Celine M. Vachon, Lynn R Goldin, Sara S. Strom, Mark C. Lanasa, Logan G. Spector, Jose F. Leis, Julie M. Cunningham, J. Brice Weinberg, Vicki A. Morrison, Neil E. Caporaso, Aaron D. Norman, Martha S. Linet, Anneclaire J. De Roos, Lindsay M. Morton, Richard K. Severson, Elio Riboli, Paolo Vineis, Rudolph Kaaks, Dimitrios Trichopoulos, Giovanna Masala, Elisabete Weiderpass, María-Dolores Chirlaque, Roel C H Vermeulen, Ruth C. Travis, Graham G. Giles, Demetrius Albanes, Jarmo Virtamo, Stephanie Weinstein, Jacqueline Clavel, Tongzhang Zheng, Theodore R Holford, Kenneth Offit, Andrew Zelenetz, Robert J. Klein, John J. Spinelli, Kimberly A. Bertrand, Francine Laden, Edward Giovannucci, Peter Kraft, Anne Kricker, Jenny Turner, Claire M. Vajdic, Maria Grazia Ennas, Giovanni M. Ferri, Lucia Miligi, Liming Liang, Joshua Sampson, Simon Crouch, Ju-hyun Park, Kari E. North, Angela Cox, John A. Snowden, Josh Wright, Angel Carracedo, Carlos Lopez-Otin, Silvia Bea, Itziar Salaverria, David Martin, Elias Campo, Joseph F. Fraumeni, Jr, Silvia de Sanjose, Henrik Hjalgrim, James R. Cerhan, Stephen J. Chanock, Nathaniel Rothman, Susan L. Slager
Nat Genet. Author manuscript; available in PMC 2014 Feb 1.
Published in final edited form as: Nat Genet. 2013 Aug; 45(8): 868–876. Published online 2013 Jun 16. doi: 10.1038/ng.2652
PMCID:
PMC3729927
ArticlePDF–1.8M
8.
The immunoglobulin domain of the sodium channel β3 subunit contains a surface-localized disulfide bond that is required for homophilic binding
Nikitha R. Yereddi, Fiona S. Cusdin, Sivakumar Namadurai, Len C. Packman, Tom P. Monie, Peter Slavny, Jeffrey J. Clare, Andrew J. Powell, Antony P. Jackson
FASEB J. 2013 Feb; 27(2): 568–580. doi: 10.1096/fj.12-209445
PMCID:
PMC3583845
AbstractArticle
9.
Multiple arrhythmic syndromes in a newborn, owing to a novel mutation in SCN5A
Kirstine Calloe, Nicole Schmitt, Soren Grubb, Ryan Pfeiffer, Jens-Peter David, Ronald Kanter, Jonathan M. Cordeiro, Charles Antzelevitch
Can J Physiol Pharmacol. Author manuscript; available in PMC 2012 Oct 1.
Published in final edited form as: Can J Physiol Pharmacol. 2011 Oct; 89(10): 723–736. Published online 2011 Sep 6. doi: 10.1139/y11-070
PMCID:
PMC3208331
AbstractArticlePDF–3.0M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
Functional dominant-negative mutation of sodium channel subunit gene SCN3B associated with atrial fibrillation in a Chinese GeneID population
Pengyun Wang, Qinbo Yang, Xiaofen Wu, Yanzong Yang, Lisong Shi, Chuchu Wang, Gang Wu, Yunlong Xia, Bo Yang, Rongfeng Zhang, Chengqi Xu, Xiang Cheng, Sisi Li, Yuanyuan Zhao, Fenfen Fu, Yuhua Liao, Fang Fang, Qiuyun Chen, Xin Tu, Qing K. Wang
Biochem Biophys Res Commun. Author manuscript; available in PMC 2011 Jul 16.
Published in final edited form as: Biochem Biophys Res Commun. 2010 Jul 16; 398(1): 98–104. doi: 10.1016/j.bbrc.2010.06.042
PMCID:
PMC3132081
AbstractArticlePDF–1.9M
12.
The Sodium Channel β3-Subunit Induces Multiphasic Gating in NaV1.3 and Affects Fast Inactivation via Distinct Intracellular Regions
Fiona S. Cusdin, Daniel Nietlispach, Joseph Maman, Timothy J. Dale, Andrew J. Powell, Jeffrey J. Clare, Antony P. Jackson
J Biol Chem. 2010 Oct 22; 285(43): 33404–33412. Published online 2010 Jul 30. doi: 10.1074/jbc.M110.114058
PMCID:
PMC2963402
AbstractArticlePDF–2.2M
13.
Sudden Infant Death Syndrome-Associated Mutations in the Sodium Channel Beta Subunits
Bi-Hua Tan, Kavitha N Pundi, David W Van Norstrand, Carmen R Valdivia, David J Tester, Argelia Medeiros-Domingo, Jonathan C. Makielski, Michael J. Ackerman
Heart Rhythm. Author manuscript; available in PMC 2011 Jun 1.
Published in final edited form as: Heart Rhythm. 2010 Jun; 7(6): 771–778. Published online 2010 Feb 1. doi: 10.1016/j.hrthm.2010.01.032
PMCID:
PMC2909680
AbstractArticlePDF–1.9M
14.
Loss-of-function mutation of the SCN3B-encoded sodium channel β3 subunit associated with a case of idiopathic ventricular fibrillation
Carmen R. Valdivia, Argelia Medeiros-Domingo, Bin Ye, Win-Kuang Shen, Timothy J. Algiers, Michael J. Ackerman, Jonathan C. Makielski
Cardiovasc Res. 2010 Jun 1; 86(3): 392–400. Published online 2009 Dec 30. doi: 10.1093/cvr/cvp417
PMCID:
PMC2868175
AbstractArticlePDF–465K
15.
The voltage-gated Na+ channel β3 subunit does not mediate trans homophilic cell adhesion or associate with the cell adhesion molecule contactin
Dyke P. McEwen, Chunling Chen, Laurence S. Meadows, Luis Lopez-Santiago, Lori L. Isom
Neurosci Lett. Author manuscript; available in PMC 2010 Sep 25.
Published in final edited form as: Neurosci Lett. 2009 Oct 25; 462(3): 272–275. Published online 2009 Jul 17. doi: 10.1016/j.neulet.2009.07.020
PMCID:
PMC2744945
AbstractArticlePDF–747K
16.
Mutations in Sodium Channel Beta1 and Beta2 Subunits Associated with Atrial Fibrillation
Hiroshi Watanabe, Dawood Darbar, Daniel W Kaiser, Kim Jiramongkolchai, Sameer Chopra, Brian S. Donahue, Prince J. Kannankeril, Dan M. Roden
Circ Arrhythm Electrophysiol. Author manuscript; available in PMC 2010 Jun 1.
Published in final edited form as: Circ Arrhythm Electrophysiol. 2009 Jun; 2(3): 268–275. Published online 2009 Mar 6. doi: 10.1161/CIRCEP.108.779181
PMCID:
PMC2727725
AbstractArticlePDF–4.4M
17.
High throughput SNP and expression analyses of candidate genes for non‐syndromic oral clefts
J W Park, J Cai, I McIntosh, E W Jabs, M D Fallin, R Ingersoll, J B Hetmanski, M Vekemans, T Attie‐Bitach, M Lovett, A F Scott, T H Beaty
J Med Genet. 2006 Jul; 43(7): 598–608. Published online 2006 Jan 13. doi: 10.1136/jmg.2005.040162
PMCID:
PMC2564555
AbstractArticlePDF–2.0M
18.
Sodium channel β1 and β3 subunits associate with neurofascin through their extracellular immunoglobulin-like domain
Charlotte F. Ratcliffe, Ruth E. Westenbroek, Rory Curtis, William A. Catterall
J Cell Biol. 2001 Jul 23; 154(2): 427–434. doi: 10.1083/jcb.200102086
PMCID:
PMC2150779
AbstractArticlePDF–233K
19.
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
PMCID:
PMC1356129
AbstractArticlePDF–438K
20.
The LIFEdb database in 2006
Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D415–D418. Published online 2005 Dec 28. doi: 10.1093/nar/gkj139
PMCID:
PMC1347501
AbstractArticlePDF–301K

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