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Select item 111662871.

SAILoR: Structure-Aware Inference of Logic Rules

Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon

PLoS One. 2024; 19(6): e0304102. Published online 2024 Jun 11. doi: 10.1371/journal.pone.0304102

PMCID:: PMC11166287

Abstract Article PDF–3.8M

Select item 103249482.

Complexities of recapitulating polygenic effects in natural populations: replication of genetic effects on wing shape in artificially selected and wild-caught populations of Drosophila melanogaster

Katie Pelletier, William R Pitchers, Anna Mammel, Emmalee Northrop-Albrecht, Eladio J Márquez, Rosa A Moscarella, David Houle, Ian Dworkin

Genetics. 2023 Jul; 224(3): iyad050. Published online 2023 Mar 24. doi: 10.1093/genetics/iyad050

PMCID:: PMC10324948

Abstract Article PDF–1.0M

Select item 97134313.

Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila

Kate Ding, Elizabeth C Barretto, Michael Johnston, Byoungchun Lee, Marco Gallo, Savraj S Grewal

G3 (Bethesda) 2022 Dec; 12(12): jkac263. Published online 2022 Oct 6. doi: 10.1093/g3journal/jkac263

PMCID:: PMC9713431

Abstract Article PDF–1.0M

Select item 96683344.

Genetic architecture of natural variation of cardiac performance from flies to humans

Saswati Saha, Lionel Spinelli, Jaime A Castro Mondragon, Anaïs Kervadec, Michaela Lynott, Laurent Kremmer, Laurence Roder, Sallouha Krifa, Magali Torres, Christine Brun, Georg Vogler, Rolf Bodmer, Alexandre R Colas, Karen Ocorr, Laurent Perrin

eLife. 2022; 11: e82459. Published online 2022 Nov 16. doi: 10.7554/eLife.82459

PMCID:: PMC9668334

Abstract Article PDF–4.8M

Select item 81352525.

Secrets of secretion—how studies of the Drosophila salivary gland have informed our understanding of the cellular networks underlying secretory organ form and function

Rajprasad Loganathan, Ji Hoon Kim, Michael B. Wells, Deborah J. Andrew

Curr Top Dev Biol. Author manuscript; available in PMC 2021 Jul 1.

Published in final edited form as: Curr Top Dev Biol. 2021; 143: 1–36. Published online 2020 Nov 19. doi: 10.1016/bs.ctdb.2020.09.005

PMCID:: PMC8135252

Abstract Article PDF–1.1M

Select item 70266536.

A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons

Julie M J Lepesant, Carole Iampietro, Eugenia Galeota, Benoit Augé, Marion Aguirrenbengoa, Clemèntine Mercé, Camille Chaubet, Vincent Rocher, Marc Haenlin, Lucas Waltzer, Mattia Pelizzola, Luisa Di Stefano

Nucleic Acids Res. 2020 Feb 20; 48(3): 1206–1224. Published online 2019 Dec 4. doi: 10.1093/nar/gkz1142

PMCID:: PMC7026653

Abstract Article PDF–6.6M

Select item 69615787.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 68932078.

An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster

Ben J. Vincent, Gavin R. Rice, Gabriella M. Wong, William J. Glassford, Kayla I. Downs, Jessica L. Shastay, Kenechukwu Charles-Obi, Malini Natarajan, Madelaine Gogol, Julia Zeitlinger, Mark Rebeiz

G3 (Bethesda) 2019 Dec; 9(12): 3961–3972. Published online 2019 Oct 16. doi: 10.1534/g3.119.400788

PMCID:: PMC6893207

Abstract Article PDF–2.1M

Select item 65046019.

Oncogenic Notch triggers neoplastic-tumorigenesis in a transition-zone like tissue microenvironment

Sheng-An Yang, Juan Martin Portilla, Sonja Mihailovic, Yi-Chun Huang, Wu-Min Deng

Dev Cell. Author manuscript; available in PMC 2020 May 6.

Published in final edited form as: Dev Cell. 2019 May 6; 49(3): 461–472.e5. Published online 2019 Apr 11. doi: 10.1016/j.devcel.2019.03.015

PMCID:: PMC6504601

Abstract Article PDF–2.8M

Select item 648595610.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 615653911.

Proper splicing contributes to visual function in the aging Drosophila eye

Rachel Stegeman, Hana Hall, Spencer E. Escobedo, Henry C. Chang, Vikki M. Weake

Aging Cell. 2018 Oct; 17(5): e12817. Published online 2018 Jul 12. doi: 10.1111/acel.12817

PMCID:: PMC6156539

Abstract Article PDF–1.2M

Select item 570780512.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900213.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 542957014.

High-content behavioral profiling reveals neuronal genetic network modulating Drosophila larval locomotor program

Boanerges Aleman-Meza, Mario Loeza-Cabrera, Omar Peña-Ramos, Michael Stern, Weiwei Zhong

BMC Genet. 2017; 18: 40. Published online 2017 May 12. doi: 10.1186/s12863-017-0513-7

PMCID:: PMC5429570

Abstract Article PDF–919K

Select item 512686415.

Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster

Punita Juneja, Andrew Quinn, Francis M. Jiggins

BMC Genomics. 2016; 17: 981. Published online 2016 Nov 28. doi: 10.1186/s12864-016-3333-7

PMCID:: PMC5126864

Abstract Article PDF–1.1M

Select item 476031116.

Transcriptomes of lineage-specific Drosophila neuroblasts profiled by genetic targeting and robotic sorting

Ching-Po Yang, Chi-Cheng Fu, Ken Sugino, Zhiyong Liu, Qingzhong Ren, Ling-Yu Liu, Xiaohao Yao, Luke P. Lee, Tzumin Lee

Development. 2016 Feb 1; 143(3): 411–421. doi: 10.1242/dev.129163

PMCID:: PMC4760311

Abstract Article

Select item 454096417.

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

Marina Naval-Sánchez, Delphine Potier, Gert Hulselmans, Valerie Christiaens, Stein Aerts

Mol Biol Evol. 2015 Sep; 32(9): 2441–2455. Published online 2015 May 4. doi: 10.1093/molbev/msv107

PMCID:: PMC4540964

Abstract Article PDF–2.8M

Select item 452833018.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832919.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929