PMC Links for GEO Profiles (Select 45671131) - PMC

Hieu T. Nim, Louis Dang, Harshini Thiyagarajah, Daniel Bakopoulos, Michael See, Natalie Charitakis, Tennille Sibbritt, Michael P. Eichenlaub, Stuart K. Archer, Nicolas Fossat, Richard E. Burke, Patrick P. L. Tam, Coral G. Warr, Travis K. Johnson, Mirana Ramialison

Genome Biol. 2021; 22: 335. Published online 2021 Dec 15. doi: 10.1186/s13059-021-02539-0

PMCID:: PMC8672579

Abstract Article PDF–2.6M

Select item 78806845.

Regenerative neurogenic response from glia requires insulin-driven neuron-glia communication

Neale J Harrison, Elizabeth Connolly, Alicia Gascón Gubieda, Zidan Yang, Benjamin Altenhein, Maria Losada Perez, Marta Moreira, Jun Sun, Alicia Hidalgo

eLife. 2021; 10: e58756. Published online 2021 Feb 2. doi: 10.7554/eLife.58756

PMCID:: PMC7880684

Abstract Article PDF–15M

Select item 78554816.

Phosphatase of Regenerating Liver-1 selectively times circadian behavior in darkness via function in PDF neurons and dephosphorylation of TIMELESS

Elżbieta Kula-Eversole, Da Hyun Lee, Ima Samba, Evrim Yildirim, Daniel C. Levine, Hee-Kyung Hong, Bridget C. Lear, Joseph Bass, Michael Rosbash, Ravi Allada

Curr Biol. Author manuscript; available in PMC 2022 Jan 11.

Published in final edited form as: Curr Biol. 2021 Jan 11; 31(1): 138–149.e5. Published online 2020 Nov 5. doi: 10.1016/j.cub.2020.10.013

PMCID:: PMC7855481

Abstract Article PDF–2.0M

Select item 75788307.

Proteomic analysis of Drosophila CLOCK complexes identifies rhythmic interactions with SAGA and Tip60 complex component NIPPED-A

Guruswamy Mahesh, Gustavo B. S. Rivas, Courtney Caster, Evan B. Ost, Ravi Amunugama, Richard Jones, David L. Allen, Paul E. Hardin

Sci Rep. 2020; 10: 17951. Published online 2020 Oct 21. doi: 10.1038/s41598-020-75009-5

PMCID:: PMC7578830

Abstract Article PDF–2.5M

Select item 75307218.

Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes

Hiro Takahashi, Shido Miyaki, Hitoshi Onouchi, Taichiro Motomura, Nobuo Idesako, Anna Takahashi, Masataka Murase, Shuichi Fukuyoshi, Toshinori Endo, Kenji Satou, Satoshi Naito, Motoyuki Itoh

Sci Rep. 2020; 10: 16289. Published online 2020 Oct 1. doi: 10.1038/s41598-020-73307-6

PMCID:: PMC7530721

Abstract Article PDF–1.1M

Select item 69615789.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 670042110.

A Novel Neuroprotective Role of Phosphatase of Regenerating Liver-1 against CO₂ Stimulation in Drosophila

Pengfei Guo, Xiao Xu, Fang Wang, Xin Yuan, Yinqi Tu, Bei Zhang, Huimei Zheng, Danqing Yu, Wanzhong Ge, Zhefeng Gong, Xiaohang Yang, Yongmei Xi

iScience. 2019 Sep 27; 19: 291–302. Published online 2019 Jul 22. doi: 10.1016/j.isci.2019.07.026

PMCID:: PMC6700421

Abstract Article PDF–3.8M

Select item 650653911.

Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila

Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner

Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0

PMCID:: PMC6506539

Abstract Article PDF–6.5M

Select item 612381012.

Circulating glucose levels inversely correlate with Drosophila larval feeding through insulin signaling and SLC5A11

Rupali Ugrankar, Pano Theodoropoulos, Fatih Akdemir, W. Mike Henne, Jonathan M. Graff

Commun Biol. 2018; 1: 110. Published online 2018 Aug 13. doi: 10.1038/s42003-018-0109-4

PMCID:: PMC6123810

Abstract Article PDF–3.4M

Select item 570780513.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900214.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 503306115.

An integrative analysis of the InR/PI3K/Akt network identifies the dynamic response to Insulin signaling

Arunachalam Vinayagam, Meghana M. Kulkarni, Richelle Sopko, Xiaoyun Sun, Yanhui Hu, Ankita Nand, Christians Villalta, Ahmadali Moghimi, Xuemei Yang, Stephanie E. Mohr, Pengyu Hong, John Asara, Norbert Perrimon

Cell Rep. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Cell Rep. 2016 Sep 13; 16(11): 3062–3074. doi: 10.1016/j.celrep.2016.08.029

PMCID:: PMC5033061

Abstract Article PDF–3.3M

Select item 492804716.

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair

Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999

PMCID:: PMC4928047

Abstract Article PDF–3.1M

Select item 482931717.

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing

Alborz Mazloomian, Irmtraud M Meyer

RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703

PMCID:: PMC4829317

Abstract Article PDF–609K

Select item 457069718.

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach

Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera

BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3

PMCID:: PMC4570697

Abstract Article PDF–2.0M

Select item 456859019.

Extensive identification and analysis of conserved small ORFs in animals

Sebastian D. Mackowiak, Henrik Zauber, Chris Bielow, Denise Thiel, Kamila Kutz, Lorenzo Calviello, Guido Mastrobuoni, Nikolaus Rajewsky, Stefan Kempa, Matthias Selbach, Benedikt Obermayer

Genome Biol. 2015; 16: 179. Published online 2015 Sep 14. doi: 10.1186/s13059-015-0742-x