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Items: 1 to 20 of 60

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
TORC1 signaling modulates Cdk8-dependent GAL gene expression in Saccharomyces cerevisiae
Riley Horvath, Nicole Hawe, Cindy Lam, Konstantin Mestnikov, Mariam Eji-Lasisi, John Rohde, Ivan Sadowski
Genetics. 2021 Dec; 219(4): iyab168. Published online 2021 Oct 5. doi: 10.1093/genetics/iyab168
PMCID:
PMC8664586
AbstractArticlePDF–1.2M
3.
Computational analysis of GAL pathway pinpoints mechanisms underlying natural variation
Jiayin Hong, Julius Palme, Bo Hua, Michael Springer
PLoS Comput Biol. 2021 Sep; 17(9): e1008691. Published online 2021 Sep 27. doi: 10.1371/journal.pcbi.1008691
PMCID:
PMC8496860
AbstractArticlePDF–11M
4.
Variation in the modality of a yeast signaling pathway is mediated by a single regulator
Julius Palme, Jue Wang, Michael Springer
eLife. 2021; 10: e69974. Published online 2021 Aug 9. doi: 10.7554/eLife.69974
PMCID:
PMC8373380
AbstractArticlePDF–2.9M
5.
Live‐cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting
Benjamin T Donovan, Anh Huynh, David A Ball, Heta P Patel, Michael G Poirier, Daniel R Larson, Matthew L Ferguson, Tineke L Lenstra
EMBO J. 2019 Jun 17; 38(12): e100809. Published online 2019 May 17. doi: 10.15252/embj.2018100809
PMCID:
PMC6576174
AbstractArticlePDF–2.1M
6.
Multi-component gene network design as a survival strategy in diverse environments
Xinyue Luo, Ruijie Song, Murat Acar
BMC Syst Biol. 2018; 12: 85. Published online 2018 Sep 26. doi: 10.1186/s12918-018-0609-3
PMCID:
PMC6158886
AbstractArticlePDF–2.0M
7.
Genetic and epigenetic strategies potentiate Gal4 activation to enhance fitness in recently diverged yeast species
Varun Sood, Jason H. Brickner
Curr Biol. Author manuscript; available in PMC 2018 Dec 4.
Published in final edited form as: Curr Biol. 2017 Dec 4; 27(23): 3591–3602.e3. Published online 2017 Nov 16. doi: 10.1016/j.cub.2017.10.035
PMCID:
PMC5846685
AbstractArticlePDF–2.8M
8.
Assigning function to natural allelic variation via dynamic modeling of gene network induction
Magali Richard, Florent Chuffart, Hélène Duplus‐Bottin, Fanny Pouyet, Martin Spichty, Etienne Fulcrand, Marianne Entrevan, Audrey Barthelaix, Michael Springer, Daniel Jost, Gaël Yvert
Mol Syst Biol. 2018 Jan; 14(1): e7803. Published online 2018 Jan 15. doi: 10.15252/msb.20177803
PMCID:
PMC5787706
AbstractArticlePDF–943K
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
Polymorphisms in the yeast galactose sensor underlie a natural continuum of nutrient-decision phenotypes
Kayla B. Lee, Jue Wang, Julius Palme, Renan Escalante-Chong, Bo Hua, Michael Springer
PLoS Genet. 2017 May; 13(5): e1006766. Published online 2017 May 24. doi: 10.1371/journal.pgen.1006766
PMCID:
PMC5464677
AbstractArticlePDF–8.0M
12.
A living vector field reveals constraints on galactose network induction in yeast
Sarah R Stockwell, Scott A Rifkin
Mol Syst Biol. 2017 Jan; 13(1): 908. Published online 2017 Jan 1. doi: 10.15252/msb.20167323
PMCID:
PMC5293160
AbstractArticlePDF–4.1M
13.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
14.
Polygenic evolution of a sugar specialization tradeoff in yeast
Jeremy I. Roop, Kyu Chul Chang, Rachel B. Brem
Nature. Author manuscript; available in PMC 2016 Aug 18.
Published in final edited form as: Nature. 2016 Feb 18; 530(7590): 336–339. Published online 2016 Feb 10. doi: 10.1038/nature16938
PMCID:
PMC4760848
AbstractArticlePDF–1.1M
15.
Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast
Alessandro Rienzo, Daniel Poveda-Huertes, Selcan Aydin, Nicolas E. Buchler, Amparo Pascual-Ahuir, Markus Proft
Mol Cell Biol. 2015 Nov; 35(21): 3669–3683. Prepublished online 2015 Aug 17. Published online 2015 Sep 30. doi: 10.1128/MCB.00729-15
PMCID:
PMC4589597
AbstractArticlePDF–2.1M
16.
Self-Association of the Gal4 Inhibitor Protein Gal80 Is Impaired by Gal3: Evidence for a New Mechanism in the GAL Gene Switch
Onur Egriboz, Sudip Goswami, Xiaorong Tao, Kathleen Dotts, Christie Schaeffer, Vepkhia Pilauri, James E. Hopper
Mol Cell Biol. 2013 Sep; 33(18): 3667–3674. doi: 10.1128/MCB.00646-12
PMCID:
PMC3753875
AbstractArticlePDF–762K
17.
Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response
Ophelia S. Venturelli, Hana El-Samad, Richard M. Murray
Proc Natl Acad Sci U S A. 2012 Nov 27; 109(48): E3324–E3333. Published online 2012 Nov 12. doi: 10.1073/pnas.1211902109
PMCID:
PMC3511703
AbstractArticlePDF–3.4M
18.
Mediator Acts Upstream of the Transcriptional Activator Gal4
Keven Ang, Gary Ee, Edwin Ang, Elvin Koh, Wee Leng Siew, Yu Mun Chan, Sabrina Nur, Yee Sun Tan, Norbert Lehming
PLoS Biol. 2012 Mar; 10(3): e1001290. Published online 2012 Mar 27. doi: 10.1371/journal.pbio.1001290
PMCID:
PMC3313914
AbstractArticlePDF–2.1M
19.
Interplay of a Ligand Sensor and an Enzyme in Controlling Expression of the Saccharomyces cerevisiaeGAL Genes
Dariusz Abramczyk, Stacey Holden, Christopher J. Page, Richard J. Reece
Eukaryot Cell. 2012 Mar; 11(3): 334–342. doi: 10.1128/EC.05294-11
PMCID:
PMC3294446
AbstractArticlePDF–2.8M
20.
Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution
Chieh Hsu, Simone Scherrer, Antoine Buetti-Dinh, Prasuna Ratna, Julia Pizzolato, Vincent Jaquet, Attila Becskei
Nat Commun. 2012 Feb 21; 3: 682. Published online 2012 Feb 21. doi: 10.1038/ncomms1687
PMCID:
PMC3293423
AbstractArticlePDF–1.3M

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