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Items: 1 to 20 of 22

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
5.
Cwc23 is a component of the NTR complex and functions to stabilize Ntr1 and facilitate disassembly of spliceosome intermediates
Yu-Lun Su, Hsin-Chou Chen, Rong-Tzong Tsai, Pei-Chun Lin, Soo-Chen Cheng
Nucleic Acids Res. 2018 Apr 20; 46(7): 3764–3773. Published online 2018 Jan 30. doi: 10.1093/nar/gky052
PMCID:
PMC6044358
AbstractArticlePDF–2.2M
6.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
7.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
8.
Swa2, the yeast homolog of mammalian auxilin, is specifically required for the propagation of the prion variant [URE3‐1]
Elizabeth M. Troisi, Michael E. Rockman, Phil P. Nguyen, Emily E. Oliver, Justin K. Hines
Mol Microbiol. 2015 Sep; 97(5): 926–941. Published online 2015 Jun 25. doi: 10.1111/mmi.13076
PMCID:
PMC4689296
AbstractArticlePDF–4.2M
9.
Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs
Hugo Bretes, Jérôme O. Rouviere, Thibaut Leger, Marlene Oeffinger, Frédéric Devaux, Valérie Doye, Benoit Palancade
Nucleic Acids Res. 2014 Apr; 42(8): 5043–5058. Published online 2014 Feb 5. doi: 10.1093/nar/gku124
PMCID:
PMC4005672
AbstractArticlePDF–8.1M
10.
Quantitative analysis of chaperone network throughput in budding yeast
Philip Brownridge, Craig Lawless, Aishwarya B Payapilly, Karin Lanthaler, Stephen W Holman, Victoria M Harman, Christopher M Grant, Robert J Beynon, Simon J Hubbard
Proteomics. 2013 Apr; 13(8): 1276–1291. Published online 2013 Mar 15. doi: 10.1002/pmic.201200412
PMCID:
PMC3791555
AbstractArticlePDF–1.0M
11.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
12.
Composition of yeast snRNPs and snoRNPs in the absence of trimethylguanosine caps reveals nuclear cap binding protein as a gained U1 component implicated in the cold-sensitivity of tgs1Δ cells
Beate Schwer, Hediye Erdjument-Bromage, Stewart Shuman
Nucleic Acids Res. 2011 Aug; 39(15): 6715–6728. Published online 2011 May 10. doi: 10.1093/nar/gkr279
PMCID:
PMC3159458
AbstractArticlePDF–8.4M
13.
Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data
Yiannis A. I. Kourmpetis, Aalt D. J. van Dijk, Marco C. A. M. Bink, Roeland C. H. J. van Ham, Cajo J. F. ter Braak
PLoS One. 2010; 5(2): e9293. Published online 2010 Feb 24. doi: 10.1371/journal.pone.0009293
PMCID:
PMC2827541
AbstractArticlePDF–1.1M
14.
Cwc23, an Essential J Protein Critical for Pre-mRNA Splicing with a Dispensable J Domain
Chandan Sahi, Thomas Lee, Maki Inada, Jeffrey A. Pleiss, Elizabeth A. Craig
Mol Cell Biol. 2010 Jan; 30(1): 33–42. Published online 2009 Oct 12. doi: 10.1128/MCB.00842-09
PMCID:
PMC2798280
AbstractArticlePDF–1.9M
15.
Spp382p Interacts with Multiple Yeast Splicing Factors, Including Possible Regulators of Prp43 DExD/H-Box Protein Function
Shatakshi Pandit, Sudakshina Paul, Li Zhang, Min Chen, Nicole Durbin, Susan M. W. Harrison, Brian C. Rymond
Genetics. 2009 Sep; 183(1): 195–206. doi: 10.1534/genetics.109.106955
PMCID:
PMC2746144
AbstractArticlePDF–1.7M
16.
Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast
Yuko Hasegawa, Kenji Irie, André P. Gerber
RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508
PMCID:
PMC2578860
AbstractArticlePDF–1.3M
17.
A Genomic Approach for the Identification and Classification of Genes Involved in Cell Wall Formation and its Regulation in Saccharomyces Cerevisiae
Piet W. J. de Groot, Cristina Ruiz, Carlos R. Vázquez de Aldana, Encarnación Dueňas, Víctor J. Cid, Francisco Del Rey, José M. Rodríquez-Peña, Pilar Pérez, Annemiek Andel, Julio Caubín, Javier Arroyo, Juan C. García, Concha Gil, María Molina, Luis J. García, César Nombela, Frans M. Klis
Comp Funct Genomics. 2001 Jun; 2(3): 124–142. doi: 10.1002/cfg.85
PMCID:
PMC2447203
SummaryPDF–258K
18.
Association of yeast Upf1p with direct substrates of the NMD pathway
Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson
Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105
PMCID:
PMC2409234
AbstractArticlePDF–864K
19.
Network of general and specialty J protein chaperones of the yeast cytosol
Chandan Sahi, Elizabeth Anne Craig
Proc Natl Acad Sci U S A. 2007 Apr 24; 104(17): 7163–7168. Published online 2007 Apr 16. doi: 10.1073/pnas.0702357104
PMCID:
PMC1855418
AbstractArticlePDF–1.0M
20.
Inhibition of a spliceosome turnover pathway suppresses splicing defects
Shatakshi Pandit, Bert Lynn, Brian C. Rymond
Proc Natl Acad Sci U S A. 2006 Sep 12; 103(37): 13700–13705. Published online 2006 Aug 31. doi: 10.1073/pnas.0603188103
PMCID:
PMC1564266
AbstractArticlePDF–736K

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