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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 102333682.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98363483.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 62913665.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 57653596.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 51374267.

Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability

Jie Peng, Wenyi Feng

Nucleic Acids Res. 2016 Dec 1; 44(21): 10216–10229. Published online 2016 Aug 17. doi: 10.1093/nar/gkw720

PMCID:: PMC5137426

Abstract Article PDF–6.6M

Select item 50550838.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser

Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007

PMCID:: PMC5055083

Abstract Article PDF–3.9M

Select item 47676459.

Analysis of COPII vesicles indicates a role for the Emp47-Ssp120 complex in transport of cell surface glycoproteins

Neil G. Margulis, Joshua D. Wilson, Christine M. Bentivoglio, Nripesh Dhungel, Aaron D. Gitler, Charles Barlowe

Traffic. Author manuscript; available in PMC 2017 Mar 1.

Published in final edited form as: Traffic. 2016 Mar; 17(3): 191–210. Published online 2016 Jan 10. doi: 10.1111/tra.12356

PMCID:: PMC4767645

Abstract Article PDF–2.8M

Select item 466488210.

Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated

Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann

Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15

PMCID:: PMC4664882

Abstract Article PDF–2.3M

Select item 461603911.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 447280812.

RSC Chromatin-Remodeling Complex Is Important for Mitochondrial Function in Saccharomyces cerevisiae

Yuko Imamura, Feifei Yu, Misaki Nakamura, Yuhki Chihara, Kyo Okane, Masahiro Sato, Muneyoshi Kanai, Ryoko Hamada, Masaru Ueno, Masashi Yukawa, Eiko Tsuchiya

PLoS One. 2015; 10(6): e0130397. Published online 2015 Jun 18. doi: 10.1371/journal.pone.0130397

PMCID:: PMC4472808

Abstract Article PDF–1.0M

Select item 422166513.

Unveiling nonessential gene deletions that confer significant morphological phenotypes beyond natural yeast strains

Ming Yang, Shinsuke Ohnuki, Yoshikazu Ohya

BMC Genomics. 2014; 15(1): 932. Published online 2014 Oct 25. doi: 10.1186/1471-2164-15-932

PMCID:: PMC4221665

Abstract Article PDF–1.4M

Select item 416915914.

Genetic Basis for Saccharomyces cerevisiae Biofilm in Liquid Medium

Kaj Scherz Andersen, Rasmus Bojsen, Laura Gro Rejkjær Sørensen, Martin Weiss Nielsen, Michael Lisby, Anders Folkesson, Birgitte Regenberg

G3 (Bethesda) 2014 Sep; 4(9): 1671–1680. Published online 2014 Jul 9. doi: 10.1534/g3.114.010892

PMCID:: PMC4169159

Abstract Article PDF–1.7M

Select item 406493915.

Aprataxin resolves adenylated RNA-DNA junctions to maintain genome integrity

Percy Tumbale, Jessica S. Williams, Matthew J. Schellenberg, Thomas A. Kunkel, R. Scott Williams

Nature. Author manuscript; available in PMC 2014 Aug 6.

Published in final edited form as: Nature. 2014 Feb 6; 506(7486): 111–115. Published online 2013 Dec 22. doi: 10.1038/nature12824

PMCID:: PMC4064939

Abstract Article PDF–3.2M

Select item 355349716.

The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis

Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman

Cell. Author manuscript; available in PMC 2014 Jan 17.

Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001

PMCID:: PMC3553497

Abstract Article PDF–5.1M

Select item 343423617.

Dissecting DNA damage response pathways by analyzing protein localization and abundance changes during DNA replication stress

Johnny M. Tkach, Askar Yimit, Anna Y. Lee, Michael Riffle, Michael Costanzo, Daniel Jaschob, Jason A. Hendry, Jiongwen Ou, Jason Moffat, Charles Boone, Trisha N. Davis, Corey Nislow, Grant W. Brown

Nat Cell Biol. Author manuscript; available in PMC 2013 Mar 1.

Published in final edited form as: Nat Cell Biol. 2012 Sep; 14(9): 966–976. Published online 2012 Jul 29. doi: 10.1038/ncb2549

PMCID:: PMC3434236

Abstract Article PDF–1.5M

Select item 331910718.

Genetic interactions between HNT3/Aprataxin and RAD27/FEN1 suggest parallel pathways for 5′ end processing during base excision repair

James M. Daley, Thomas E. Wilson, Dindial Ramotar

DNA Repair (Amst) Author manuscript; available in PMC 2012 Apr 4.

Published in final edited form as: DNA Repair (Amst). 2010 Jun 4; 9(6): 690–699. Published online 2010 Apr 15. doi: 10.1016/j.dnarep.2010.03.006

PMCID:: PMC3319107

Abstract Article PDF–3.5M

Select item 321910119.

A chemical-genetic screen to unravel the genetic network of CDC28/CDK1 links ubiquitin and Rad6–Bre1 to cell cycle progression

Christine Zimmermann, Pierre Chymkowitch, Vegard Eldholm, Christopher D. Putnam, Jessica M. Lindvall, Manja Omerzu, Magnar Bjørås, Richard D. Kolodner, Jorrit M. Enserink

Proc Natl Acad Sci U S A. 2011 Nov 15; 108(46): 18748–18753. Published online 2011 Oct 31. doi: 10.1073/pnas.1115885108

PMCID:: PMC3219101

Abstract Article PDF–1.4M

Select item 281284420.

Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis

Franco J. Vizeacoumar, Nydia van Dyk, Frederick S.Vizeacoumar, Vincent Cheung, Jingjing Li, Yaroslav Sydorskyy, Nicolle Case, Zhijian Li, Alessandro Datti, Corey Nislow, Brian Raught, Zhaolei Zhang, Brendan Frey, Kerry Bloom, Charles Boone, Brenda J. Andrews

J Cell Biol. 2010 Jan 11; 188(1): 69–81. doi: 10.1083/jcb.200909013