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Items: 16

1.
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing
Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide
RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707
PMCID:
PMC10761121
AbstractArticlePDF–2.5M
2.
A transcriptional cofactor regulatory network for the C. elegans intestine
Brent B Horowitz, Shivani Nanda, Albertha J M Walhout
G3 (Bethesda) 2023 Jul; 13(7): jkad096. Published online 2023 Apr 29. doi: 10.1093/g3journal/jkad096
PMCID:
PMC10320766
AbstractArticlePDF–1.9M
3.
Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono
J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343
PMCID:
PMC9437848
AbstractArticlePDF–2.0M
4.
Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans
Karl-Frédéric Vieux, Katherine P Prothro, Leanne H Kelley, Cameron Palmer, Eleanor M Maine, Isana Veksler-Lublinsky, Katherine McJunkin
Nucleic Acids Res. 2021 Nov 8; 49(19): 11167–11180. Published online 2021 Sep 29. doi: 10.1093/nar/gkab840
PMCID:
PMC8565341
AbstractArticlePDF–1.7M
5.
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono
J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094
Correction in:
J Biol Chem. 2022 Jun; 298(6): 102081.
PMCID:
PMC8446793
AbstractArticlePDF–1.6M
6.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
7.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
8.
The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans
Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun
Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012
PMCID:
PMC6826145
AbstractArticlePDF–3.0M
9.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
10.
Tudor staphylococcal nuclease is a structure-specific ribonuclease that degrades RNA at unstructured regions during microRNA decay
Chia-Lung Li, Wei-Zen Yang, Zhonghao Shi, Hanna S. Yuan
RNA. 2018 May; 24(5): 739–748. doi: 10.1261/rna.064501.117
PMCID:
PMC5900569
AbstractArticlePDF–4.6M
11.
The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription
Alper Akay, Tomas Di Domenico, Kin M. Suen, Amena Nabih, Guillermo E. Parada, Mark Larance, Ragini Medhi, Ahmet C. Berkyurek, Xinlian Zhang, Christopher J. Wedeles, Konrad L.M. Rudolph, Jan Engelhardt, Martin Hemberg, Ping Ma, Angus I. Lamond, Julie M. Claycomb, Eric A. Miska
Dev Cell. 2017 Aug 7; 42(3): 241–255.e6. doi: 10.1016/j.devcel.2017.07.002
PMCID:
PMC5554785
AbstractArticlePDF–29M
12.
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, Victor R. Ambros
Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): E5271–E5280. Published online 2015 Sep 8. doi: 10.1073/pnas.1506576112
PMCID:
PMC4586838
AbstractArticlePDF–1.1M
13.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
14.
The candidate MAP kinase phosphorylation substrate DPL-1 (DP) promotes expression of the MAP kinase phosphatase LIP-1 in C. elegans germ cells
Baiqing Lin, Valerie Reinke
Dev Biol. Author manuscript; available in PMC 2009 Apr 1.
Published in final edited form as: Dev Biol. 2008 Apr 1; 316(1): 50–61. Published online 2008 Jan 8. doi: 10.1016/j.ydbio.2007.12.042
PMCID:
PMC2359152
AbstractArticlePDF–2.5M
15.
Systematic identification of miRISC proteins, miRNAs, and their mRNA targets in C. elegans by their interactions with GW182 family proteins AIN-1 and AIN-2
Liang Zhang, Lei Ding, Tom H. Cheung, Meng-Qiu Dong, Jun Chen, Aileen K. Sewell, Xuedong Liu, John R. Yates, III, Min Han
Mol Cell. Author manuscript; available in PMC 2008 May 30.
Published in final edited form as: Mol Cell. 2007 Nov 30; 28(4): 598–613. doi: 10.1016/j.molcel.2007.09.014
PMCID:
PMC2186060
AbstractArticlePDF–2.1M
16.
Efficient target-selected mutagenesis in Caenorhabditis elegans: Toward a knockout for every gene
Edwin Cuppen, Eelke Gort, Esther Hazendonk, Josine Mudde, José van de Belt, Isaäc J. Nijman, Victor Guryev, Ronald H.A. Plasterk
Genome Res. 2007 May; 17(5): 649–658. doi: 10.1101/gr.6080607
PMCID:
PMC1855173
AbstractArticlePDF–674K

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