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Items: 1 to 20 of 63

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis
Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger
Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7
PMCID:
PMC11024185
AbstractArticlePDF–7.4M
3.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
A Role for the Interactions between Polδ and PCNA Revealed by Analysis of pol3-01 Yeast Mutants
Shaked Nir Heyman, Mika Golan, Batia Liefshitz, Martin Kupiec
Genes (Basel) 2023 Feb; 14(2): 391. Published online 2023 Feb 2. doi: 10.3390/genes14020391
PMCID:
PMC9957047
AbstractArticlePDF–1.8M
6.
Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes
Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees
Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092
PMCID:
PMC9339293
AbstractArticlePDF–7.9M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
The inner side of yeast PCNA contributes to genome stability by mediating interactions with Rad18 and the replicative DNA polymerase δ
Robert Toth, Miklos Halmai, Zsuzsanna Gyorfy, Eva Balint, Ildiko Unk
Sci Rep. 2022; 12: 5163. Published online 2022 Mar 25. doi: 10.1038/s41598-022-09208-7
PMCID:
PMC8956578
AbstractArticlePDF–4.2M
9.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
10.
Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Chloe Du Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Ka-Yi Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
J Biol Chem. 2021 Aug; 297(2): 100912. Published online 2021 Jun 24. doi: 10.1016/j.jbc.2021.100912
PMCID:
PMC8319531
AbstractArticlePDF–2.1M
11.
Structure of eukaryotic DNA polymerase δ bound to the PCNA clamp while encircling DNA
Fengwei Zheng, Roxana E. Georgescu, Huilin Li, Michael E. O’Donnell
Proc Natl Acad Sci U S A. 2020 Dec 1; 117(48): 30344–30353. Published online 2020 Nov 17. doi: 10.1073/pnas.2017637117
PMCID:
PMC7720213
AbstractArticlePDF–2.9M
12.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
13.
Structure and Mechanism of B-family DNA Polymerase ζ Specialized for Translesion DNA Synthesis
Radhika Malik, Mykhailo Kopylov, Yacob Gomez-Llorente, Rinku Jain, Robert E. Johnson, Louise Prakash, Satya Prakash, Iban Ubarretxena-Belandia, Aneel K. Aggarwal
Nat Struct Mol Biol. Author manuscript; available in PMC 2021 Feb 17.
Published in final edited form as: Nat Struct Mol Biol. 2020 Oct; 27(10): 913–924. Published online 2020 Aug 17. doi: 10.1038/s41594-020-0476-7
PMCID:
PMC7554088
AbstractArticlePDF–7.0M
14.
Cryo-EM structure and dynamics of eukaryotic DNA polymerase δ holoenzyme
Rinku Jain, William J. Rice, Radhika Malik, Robert E. Johnson, Louise Prakash, Satya Prakash, Iban Ubarretxena-Belandia, Aneel K. Aggarwal
Nat Struct Mol Biol. Author manuscript; available in PMC 2020 Oct 3.
Published in final edited form as: Nat Struct Mol Biol. 2019 Oct; 26(10): 955–962. Published online 2019 Oct 3. doi: 10.1038/s41594-019-0305-z
PMCID:
PMC7309520
AbstractArticlePDF–2.7M
15.
Apn2 Resolves Blocked 3’ Ends and Suppresses Top1-Induced Mutagenesis at Genomic rNMP Sites.
Fuyang Li, Quan Wang, Ja-Hwan Seol, Jun Che, Xiaoyu Lu, Eun Yong Shim, Sang Eun Lee, Hengyao Niu
Nat Struct Mol Biol. Author manuscript; available in PMC 2019 Aug 18.
Published in final edited form as: Nat Struct Mol Biol. 2019 Mar; 26(3): 155–163. Published online 2019 Feb 18. doi: 10.1038/s41594-019-0186-1
PMCID:
PMC6515903
AbstractArticlePDF–1.6M
16.
PCNA accelerates the nucleotide incorporation rate by DNA polymerase δ
Tanumoy Mondol, Joseph L Stodola, Roberto Galletto, Peter M Burgers
Nucleic Acids Res. 2019 Feb 28; 47(4): 1977–1986. Published online 2019 Jan 3. doi: 10.1093/nar/gky1321
PMCID:
PMC6393303
AbstractArticlePDF–2.3M
17.
Mechanism of Bidirectional Leading-Strand Synthesis Establishment at Eukaryotic DNA Replication Origins
Valentina Aria, Joseph T.P. Yeeles
Mol Cell. 2019 Jan 17; 73(2): 199–211.e10. doi: 10.1016/j.molcel.2018.10.019
PMCID:
PMC6344338
AbstractArticle
18.
A Redox Role for the [4Fe4S] Cluster of Yeast DNA Polymerase δ
Phillip L. Bartels, Joseph L. Stodola, Peter M.J. Burgers, Jacqueline K. Barton
J Am Chem Soc. Author manuscript; available in PMC 2018 Apr 3.
Published in final edited form as: J Am Chem Soc. 2017 Dec 20; 139(50): 18339–18348. Published online 2017 Dec 6. doi: 10.1021/jacs.7b10284
PMCID:
PMC5881389
AbstractArticlePDF–1.4M
19.
The translesion DNA polymerases Pol ζ and Rev1 are activated independently of PCNA ubiquitination upon UV radiation in mutants of DNA polymerase δ
Carine Tellier-Lebegue, Eléa Dizet, Emilie Ma, Xavier Veaute, Eric Coïc, Jean-Baptiste Charbonnier, Laurent Maloisel
PLoS Genet. 2017 Dec; 13(12): e1007119. Published online 2017 Dec 27. doi: 10.1371/journal.pgen.1007119
Correction in:
PLoS Genet. 2018 Feb; 14(2): e1007236.
PMCID:
PMC5760103
AbstractArticlePDF–4.5M
20.
Exploring Quantitative Yeast Phenomics with Single Cell Analysis of DNA Damage Foci
Erin B. Styles, Karen J. Founk, Lee A. Zamparo, Tina L. Sing, Dogus Altintas, Cyril Ribeyre, Virginie Ribaud, Jacques Rougemont, David Mayhew, Michael Costanzo, Matej Usaj, Adrian J. Verster, Elizabeth N. Koch, Daniele Novarina, Marco Graf, Brian Luke, Marco Muzi-Falconi, Chad L. Myers, Robi David Mitra, David Shore, Grant W. Brown, Zhaolei Zhang, Charles Boone, Brenda J. Andrews
Cell Syst. Author manuscript; available in PMC 2017 Nov 16.
Published in final edited form as: Cell Syst. 2016 Sep 28; 3(3): 264–277.e10. Published online 2016 Sep 8. doi: 10.1016/j.cels.2016.08.008
PMCID:
PMC5689480
AbstractArticlePDF–2.9M

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