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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 87755915.

Systematic Screening of Penetratin’s Protein Targets by Yeast Proteome Microarrays

Pramod Shah, Chien-Sheng Chen

Int J Mol Sci. 2022 Jan; 23(2): 712. Published online 2022 Jan 10. doi: 10.3390/ijms23020712

PMCID:: PMC8775591

Abstract Article PDF–5.0M

Select item 85119506.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 84208777.

SPATIO-TEMPORAL COORDINATION OF TRANSCRIPTION PREINITIATION COMPLEX ASSEMBLY IN LIVE CELLS

Vu Q. Nguyen, Anand Ranjan, Sheng Liu, Xiaona Tang, Yick Hin Ling, Jan Wisniewski, Gaku Mizuguchi, Kai Yu Li, Vivian Jou, Qinsi Zheng, Luke D. Lavis, Timothée Lionnet, Carl Wu

Mol Cell. Author manuscript; available in PMC 2022 Sep 2.

Published in final edited form as: Mol Cell. 2021 Sep 2; 81(17): 3560–3575.e6. Published online 2021 Aug 9. doi: 10.1016/j.molcel.2021.07.022

PMCID:: PMC8420877

Abstract Article PDF–2.1M

Select item 71998518.

Noncanonical regulation of phosphatidylserine metabolism by a Sec14-like protein and a lipid kinase

Yaxi Wang, Peihua Yuan, Aby Grabon, Ashutosh Tripathi, Dongju Lee, Martin Rodriguez, Max Lönnfors, Michal Eisenberg-Bord, Zehua Wang, Sin Man Lam, Maya Schuldiner, Vytas A. Bankaitis

J Cell Biol. 2020 May 4; 219(5): e201907128. Published online 2020 Apr 17. doi: 10.1083/jcb.201907128

PMCID:: PMC7199851

Abstract Article PDF–6.7M

Select item 63668989.

Requirements for RNA polymerase II preinitiation complex formation in vivo

Natalia Petrenko, Yi Jin, Liguo Dong, Koon Ho Wong, Kevin Struhl

eLife. 2019; 8: e43654. Published online 2019 Jan 25. doi: 10.7554/eLife.43654

PMCID:: PMC6366898

Abstract Article PDF–1.4M

Select item 629136610.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 592252811.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319

PMCID:: PMC5922528

Abstract Article PDF–7.1M

Select item 576535912.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188513.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 558919614.

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex

Philip J. Robinson, Michael J. Trnka, David A. Bushnell, Ralph Davis, Pierre-Jean Mattei, Alma L. Burlingame, Roger D. Kornberg

Cell. Author manuscript; available in PMC 2017 Sep 8.

Published in final edited form as: Cell. 2016 Sep 8; 166(6): 1411–1422.e16. doi: 10.1016/j.cell.2016.08.050

PMCID:: PMC5589196

Abstract Article PDF–1.5M

Select item 520434815.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 464075116.

Structure of an RNA polymerase II preinitiation complex

Kenji Murakami, Kuang-Lei Tsai, Nir Kalisman, David A. Bushnell, Francisco J. Asturias, Roger D. Kornberg

Proc Natl Acad Sci U S A. 2015 Nov 3; 112(44): 13543–13548. Published online 2015 Oct 19. doi: 10.1073/pnas.1518255112

PMCID:: PMC4640751

Abstract Article PDF–1.9M

Select item 462431517.

Real-Time Observation of the Initiation of RNA Polymerase II Transcription

Furqan M. Fazal, Cong A. Meng, Kenji Murakami, Roger D. Kornberg, Steven M. Block

Nature. Author manuscript; available in PMC 2016 Mar 10.

Published in final edited form as: Nature. 2015 Sep 10; 525(7568): 274–277. Published online 2015 Sep 2. doi: 10.1038/nature14882

PMCID:: PMC4624315

Abstract Article PDF–1.4M

Select item 406676518.

Insights into how Spt5 functions in transcription elongation and repressing transcription coupled DNA repair

Wentao Li, Cristina Giles, Shisheng Li

Nucleic Acids Res. 2014 Jul 1; 42(11): 7069–7083. Published online 2014 May 9. doi: 10.1093/nar/gku333

PMCID:: PMC4066765

Abstract Article PDF–4.4M

Select item 405396419.

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim

Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13

PMCID:: PMC4053964

Abstract Article PDF–1.7M

Select item 403908220.

Architecture of an RNA polymerase II transcription pre-initiation complex

Kenji Murakami, Hans Elmlund, Nir Kalisman, David A. Bushnell, Christopher M. Adams, Maia Azubel, Dominika Elmlund, Yael Levi-Kalisman, Xin Liu, Michael Levitt, Roger D. Kornberg, Brian J. Gibbons

Science. Author manuscript; available in PMC 2014 May 30.

Published in final edited form as: Science. 2013 Nov 8; 342(6159): 1238724. Published online 2013 Sep 26. doi: 10.1126/science.1238724

PMCID:: PMC4039082

Abstract Article PDF–4.0M

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