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Items: 20

1.
DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples
Fenglong Jiao, Clinton Yu, Andrew Wheat, Lijun Chen, Tung-Shing Mamie Lih, Hui Zhang, Lan Huang
J Proteome Res. Author manuscript; available in PMC 2024 Aug 3.
Published in final edited form as: J Proteome Res. 2024 Aug 2; 23(8): 3269–3279. Published online 2024 Feb 9. doi: 10.1021/acs.jproteome.3c00832
PMCID:
PMC11296914
AbstractArticlePDF–1.7M
2.
Recessive variants in COL25A1 gene as novel cause of arthrogryposis multiplex congenita with ocular congenital cranial dysinnervation disorder
Daniel Natera-de Benito, Julie A. Jurgens, Alison Yeung, Irina T. Zaharieva, Adnan Manzur, Stephanie P. DiTroia, Silvio Alessandro Di Gioia, Lynn Pais, Veronica Pini, Brenda J. Barry, Wai-Man Chan, James E Elder, John Christodoulou, Eleanor Hay, Eleina M. England, Pinki Munot, David G. Hunter, Lucy Feng, Danielle Ledoux, Anne O’Donnell-Luria, Rahul Phadke, Elizabeth C. Engle, Anna Sarkozy, Francesco Muntoni
Hum Mutat. Author manuscript; available in PMC 2023 Apr 1.
Published in final edited form as: Hum Mutat. 2022 Apr; 43(4): 487–498. Published online 2022 Feb 3. doi: 10.1002/humu.24333
PMCID:
PMC8960342
AbstractArticlePDF–1.3M
3.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
4.
Collagenous Alzheimer amyloid plaque component impacts on the compaction of amyloid-β plaques
Tadafumi Hashimoto, Daisuke Fujii, Yasushi Naka, Mayu Kashiwagi-Hakozaki, Yuko Matsuo, Yusuke Matsuura, Tomoko Wakabayashi, Takeshi Iwatsubo
Acta Neuropathol Commun. 2020; 8: 212. Published online 2020 Dec 7. doi: 10.1186/s40478-020-01075-5
PMCID:
PMC7720522
AbstractArticlePDF–7.9M
5.
Estrogen-regulated feedback loop limits the efficacy of estrogen receptor–targeted breast cancer therapy
Tengfei Xiao, Wei Li, Xiaoqing Wang, Han Xu, Jixin Yang, Qiu Wu, Ying Huang, Joseph Geradts, Peng Jiang, Teng Fei, David Chi, Chongzhi Zang, Qi Liao, Jonathan Rennhack, Eran Andrechek, Nanlin Li, Simone Detre, Mitchell Dowsett, Rinath M. Jeselsohn, X. Shirley Liu, Myles Brown
Proc Natl Acad Sci U S A. 2018 Jul 31; 115(31): 7869–7878. Published online 2018 Jul 9. doi: 10.1073/pnas.1722617115
PMCID:
PMC6077722
AbstractArticlePDF–2.4M
6.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
7.
High-throughput analyses of hnRNP H1 dissects its multi-functional aspect
Philip J. Uren, Emad Bahrami-Samani, Patricia Rosa de Araujo, Christine Vogel, Mei Qiao, Suzanne C. Burns, Andrew D. Smith, Luiz O. F. Penalva
RNA Biol. 2016 Apr; 13(4): 400–411. Published online 2016 Jan 13. doi: 10.1080/15476286.2015.1138030
PMCID:
PMC4841607
AbstractArticlePDF–1.6M
8.
Recessive Mutations in COL25A1 Are a Cause of Congenital Cranial Dysinnervation Disorder
Jameela M.A. Shinwari, Arif Khan, Salma Awad, Zakia Shinwari, Ayodele Alaiya, Mohamad Alanazi, Asma Tahir, Coralie Poizat, Nada Al Tassan
Am J Hum Genet. 2015 Jan 8; 96(1): 147–152. doi: 10.1016/j.ajhg.2014.11.006
PMCID:
PMC4289688
AbstractArticlePDF–384K
9.
Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver
Alexandra Naba, Karl R Clauser, Charles A Whittaker, Steven A Carr, Kenneth K Tanabe, Richard O Hynes
BMC Cancer. 2014; 14: 518. Published online 2014 Jul 18. doi: 10.1186/1471-2407-14-518
PMCID:
PMC4223627
AbstractArticlePDF–1.5M
10.
Genome-Wide Association Studies and Heritability Estimates of Body Mass Index Related Phenotypes in Bangladeshi Adults
Molly Scannell Bryan, Maria Argos, Brandon Pierce, Lin Tong, Muhammad Rakibuz-Zaman, Alauddin Ahmed, Mahfuzar Rahman, Tariqul Islam, Muhammad Yunus, Faruque Parvez, Shantanu Roy, Farzana Jasmine, John A. Baron, Muhammad G. Kibriya, Habibul Ahsan
PLoS One. 2014; 9(8): e105062. Published online 2014 Aug 18. doi: 10.1371/journal.pone.0105062
PMCID:
PMC4136799
AbstractArticlePDF–692K
11.
Association of COL25A1 with Comorbid Antisocial Personality Disorder (ASPD) and Substance Dependence
Dawei Li, Hongyu Zhao, Henry R. Kranzler, David Oslin, Raymond F Anton, Lindsay A Farrer, Joel Gelernter
Biol Psychiatry. Author manuscript; available in PMC 2013 Apr 15.
Published in final edited form as: Biol Psychiatry. 2012 Apr 15; 71(8): 733–740. Published online 2012 Jan 31. doi: 10.1016/j.biopsych.2011.12.011
PMCID:
PMC3548659
AbstractArticlePDF–1020K
12.
Genome-wide methylation profiling identifies hypermethylated biomarkers in high-grade cervical intraepithelial neoplasia
Ágnes Lendvai, Frank Johannes, Christina Grimm, Jasper J.H. Eijsink, René Wardenaar, Haukeline H. Volders, Harry G. Klip, Harry Hollema, Ritsert C. Jansen, Ed Schuuring, G. Bea A. Wisman, Ate G.J. van der Zee
Epigenetics. 2012 Nov 1; 7(11): 1268–1278. doi: 10.4161/epi.22301
PMCID:
PMC3499328
AbstractArticlePDF–1.2M
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
Differential Genetic Associations for Systemic Lupus Erythematosus Based on Anti–dsDNA Autoantibody Production
Sharon A. Chung, Kimberly E. Taylor, Robert R. Graham, Joanne Nititham, Annette T. Lee, Ward A. Ortmann, Chaim O. Jacob, Marta E. Alarcón-Riquelme, Betty P. Tsao, John B. Harley, Patrick M. Gaffney, Kathy L. Moser, SLEGEN, Michelle Petri, F. Yesim Demirci, M. Ilyas Kamboh, Susan Manzi, Peter K. Gregersen, Carl D. Langefeld, Timothy W. Behrens, Lindsey A. Criswell
PLoS Genet. 2011 Mar; 7(3): e1001323. Published online 2011 Mar 3. doi: 10.1371/journal.pgen.1001323
PMCID:
PMC3048371
AbstractArticlePDF–622K
15.
Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score
Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl
Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159
Correction in:
Mol Med. 2012; 18(1): 729.
PMCID:
PMC2896464
AbstractArticlePDF–2.4M
16.
A systematic gene-based screen of chr4q22–q32 identifies association of a novel susceptibility gene, DKK2, with the quantitative trait of alcohol dependence symptom counts
Gursharan Kalsi, Po-Hsiu Kuo, Fazil Aliev, Jeffry Alexander, Omari McMichael, Diana G. Patterson, Dermot Walsh, Zhongming Zhao, Marc Schuckit, John Nurnberger, Jr, Howard Edenberg, John Kramer, Vladimir Vladimirov, Carol A. Prescott, Danielle M. Dick, Kenneth S. Kendler, Brien P. Riley
Hum Mol Genet. 2010 Jun 15; 19(12): 2497–2506. Published online 2010 Mar 23. doi: 10.1093/hmg/ddq112
Correction in:
Hum Mol Genet. 2010 Oct 15; 19(20): 4121.
PMCID:
PMC2876884
AbstractArticlePDF–226K
17.
COL25A1 triggers and promotes Alzheimer’s disease-like pathology in vivo
Ying Tong, Ying Xu, Kimberly Scearce-Levie, Louis J. Ptáček, Ying-Hui Fu
Neurogenetics. 2010; 11(1): 41–52. Published online 2009 Jun 23. doi: 10.1007/s10048-009-0201-5
PMCID:
PMC2807601
AbstractArticlePDF–771K
18.
Mostly Separate Distributions of CLAC- versus Aβ40- or Thioflavin S-Reactivities in Senile Plaques Reveal Two Distinct Subpopulations of β-Amyloid Deposits
Hisatomo Kowa, Tomoko Sakakura, Yusuke Matsuura, Tomoko Wakabayashi, David M.A. Mann, Karen Duff, Shoji Tsuji, Tadafumi Hashimoto, Takeshi Iwatsubo
Am J Pathol. 2004 Jul; 165(1): 273–281. doi: 10.1016/s0002-9440(10)63295-6
PMCID:
PMC1618534
AbstractArticlePDF–2.3M
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
20.
CLAC: a novel Alzheimer amyloid plaque component derived from a transmembrane precursor, CLAC-P/collagen type XXV
Tadafumi Hashimoto, Tomoko Wakabayashi, Atsushi Watanabe, Hisatomo Kowa, Ritsuko Hosoda, Atsushi Nakamura, Ichiro Kanazawa, Takao Arai, Koji Takio, David M.A. Mann, Takeshi Iwatsubo
EMBO J. 2002 Apr 2; 21(7): 1524–1534. doi: 10.1093/emboj/21.7.1524
PMCID:
PMC125364
AbstractArticlePDF–500K

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