PMC Links for GEO Profiles (Select 4796623) - PMC

Select item 92098111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 57653592.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56618853.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 55267904.

PP2A Controls Genome Integrity by Integrating Nutrient-Sensing and Metabolic Pathways with the DNA Damage Response

Elisa Ferrari, Christopher Bruhn, Marta Peretti, Corinne Cassani, Walter Vincenzo Carotenuto, Mohamed Elgendy, Ghadeer Shubassi, Chiara Lucca, Rodrigo Bermejo, Mario Varasi, Saverio Minucci, Maria Pia Longhese, Marco Foiani

Mol Cell. 2017 Jul 20; 67(2): 266–281.e4. doi: 10.1016/j.molcel.2017.05.027

PMCID:: PMC5526790

Abstract Article

Select item 52476435.

Loss of Cardiolipin Leads to Perturbation of Acetyl-CoA Synthesis

Vaishnavi Raja, Amit S. Joshi, Guiling Li, Krishna Rao Maddipati, Miriam L. Greenberg

J Biol Chem. 2017 Jan 20; 292(3): 1092–1102. Published online 2016 Dec 9. doi: 10.1074/jbc.M116.753624

PMCID:: PMC5247643

Abstract Article PDF–1.3M

Select item 48698356.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Abstract Article PDF–2.7M

Select item 33171607.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Abstract Article PDF–998K

Select item 30570958.

The nucleotide sequence of Saccharomyces cerevisiae chromosome V

F. S. Dietrich, J. Mulligan, K. Hennessy, M. A. Yelton, E. Allen, R. Araujo, E. Aviles, A. Berno, T. Brennan, J. Carpenter, E. Chen, J. M. Cherry, E. Chung, M. Duncan, E. Guzman, G. Hartzell, S. Hunicke-Smith, R. W. Hyman, A. Kayser, C. Komp, D. Lashkari, H. Lew, D. Lin, D. Mosedale, K. Nakahara, A. Namath, R. Norgren, P. Oefner, C. Oh, F. X. Petel, D. Roberts, P. Sehl, S. Schramm, T. Shogren, V. Smith, P. Taylor, Y. Wei, D. Botstein, R. W. Davis

Nature. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 78–81.

PMCID:: PMC3057095

Abstract Article PDF–73K

Select item 29504369.

Sulfate Assimilation Mediates Tellurite Reduction and Toxicity in Saccharomyces cerevisiae

Lars-Göran Ottosson, Katarina Logg, Sebastian Ibstedt, Per Sunnerhagen, Mikael Käll, Anders Blomberg, Jonas Warringer

Eukaryot Cell. 2010 Oct; 9(10): 1635–1647. doi: 10.1128/EC.00078-10

PMCID:: PMC2950436

Abstract Article PDF–3.2M

Select item 257886010.

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

Yuko Hasegawa, Kenji Irie, André P. Gerber

RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508

PMCID:: PMC2578860

Abstract Article PDF–1.3M

Select item 225860711.

Identification of Genes Affecting Hydrogen Sulfide Formation in Saccharomyces cerevisiae

Angela L. Linderholm, Carrie L. Findleton, Gagandeep Kumar, Yeun Hong, Linda F. Bisson

Appl Environ Microbiol. 2008 Mar; 74(5): 1418–1427. Published online 2008 Jan 11. doi: 10.1128/AEM.01758-07

PMCID:: PMC2258607

Abstract Article PDF–197K

Select item 225800612.

Annotating novel genes by integrating synthetic lethals and genomic information

Daniel Schöner, Markus Kalisch, Christian Leisner, Lukas Meier, Marc Sohrmann, Mahamadou Faty, Yves Barral, Matthias Peter, Wilhelm Gruissem, Peter Bühlmann

BMC Syst Biol. 2008; 2: 3. Published online 2008 Jan 14. doi: 10.1186/1752-0509-2-3

PMCID:: PMC2258006

Abstract Article PDF–523K

Select item 118934213.

Large-scale identification of yeast integral membrane protein interactions

John P. Miller, Russell S. Lo, Asa Ben-Hur, Cynthia Desmarais, Igor Stagljar, William Stafford Noble, Stanley Fields

Proc Natl Acad Sci U S A. 2005 Aug 23; 102(34): 12123–12128. Published online 2005 Aug 10. doi: 10.1073/pnas.0505482102

PMCID:: PMC1189342

Abstract Article PDF–653K

Select item 9533014.

New Plasmid System To Select for Saccharomyces cerevisiae Purine-Cytosine Permease Affinity Mutants

Renaud Wagner, Marie-Laure Straub, Jean-Luc Souciet, Serge Potier, Jacky de Montigny

J Bacteriol. 2001 Jul; 183(14): 4386–4388. doi: 10.1128/JB.183.14.4386-4388.2001

PMCID:: PMC95330

Abstract Article PDF–66K

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