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Items: 1 to 20 of 62

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
AbstractArticlePDF–1.7M
2.
Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress
Andreas Hadjicharalambous, Alex J. Whale, Geylani Can, J. Mark Skehel, Jonathan M. Houseley, Philip Zegerman
Version 1. Wellcome Open Res. 2023; 8: 327. Published online 2023 Jul 26. doi: 10.12688/wellcomeopenres.19617.1
PMCID:
PMC10521137
AbstractArticlePDF–4.0M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Fur4‐mediated uracil‐scavenging to screen for surface protein regulators
Katherine M. Paine, Gabrielle B. Ecclestone, Chris MacDonald
Traffic. 2021 Nov; 22(11): 397–408. Published online 2021 Sep 23. doi: 10.1111/tra.12815
PMCID:
PMC8650575
AbstractArticlePDF–25M
5.
Set4 regulates stress response genes and coordinates histone deacetylases within yeast subtelomeres
Yogita Jethmalani, Khoa Tran, Maraki Y Negesse, Winny Sun, Mark Ramos, Deepika Jaiswal, Meagan Jezek, Shandon Amos, Eric Joshua Garcia, DoHwan Park, Erin M Green
Life Sci Alliance. 2021 Dec; 4(12): e202101126. Published online 2021 Oct 8. doi: 10.26508/lsa.202101126
PMCID:
PMC8507492
AbstractArticlePDF–3.4M
6.
Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction
Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon
Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012
PMCID:
PMC7758880
AbstractArticle
7.
The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation
Teresa M. Buck, Xuemei Zeng, Pamela S. Cantrell, Richard T. Cattley, Zikri Hasanbasri, Megan E. Yates, Diep Nguyen, Nathan A. Yates, Jeffrey L. Brodsky
Mol Cell Proteomics. 2020 Nov; 19(11): 1896–1909. Published online 2020 Aug 31. doi: 10.1074/mcp.RA120.002050
PMCID:
PMC7664122
AbstractArticlePDF–1.2M
8.
Gross Chromosomal Rearrangements in Kluyveromyces marxianus Revealed by Illumina and Oxford Nanopore Sequencing
Lin Ding, Harrison D. Macdonald, Hamilton O. Smith, Clyde A. Hutchison, III, Chuck Merryman, Todd P. Michael, Bradley W. Abramson, Krishna Kannan, Joe Liang, John Gill, Daniel G. Gibson, John I. Glass
Int J Mol Sci. 2020 Oct; 21(19): 7112. Published online 2020 Sep 26. doi: 10.3390/ijms21197112
PMCID:
PMC7582981
AbstractArticlePDF–1.1M
9.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
10.
SIR2 Expression Noise Can Generate Heterogeneity in Viability but Does Not Affect Cell-to-Cell Epigenetic Silencing of Subtelomeric URA3 in Yeast
Jian Liu, Laureline Mosser, Catherine Botanch, Jean-Marie François, Jean-Pascal Capp
G3 (Bethesda) 2020 Sep; 10(9): 3435–3443. Published online 2020 Jul 28. doi: 10.1534/g3.120.401589
PMCID:
PMC7466964
AbstractArticlePDF–1.3M
11.
A novel ER membrane protein Ehg1/May24 plays a critical role in maintaining multiple nutrient permeases in yeast under high-pressure perturbation
Goyu Kurosaka, Satoshi Uemura, Takahiro Mochizuki, Yuri Kozaki, Akiko Hozumi, Sayuri Suwa, Ryoga Ishii, Yusuke Kato, Saki Imura, Natsuho Ishida, Yoichi Noda, Fumiyoshi Abe
Sci Rep. 2019; 9: 18341. Published online 2019 Dec 4. doi: 10.1038/s41598-019-54925-1
PMCID:
PMC6892922
AbstractArticlePDF–5.4M
12.
Limits to Compensatory Mutations: Insights from Temperature-Sensitive Alleles
Katarzyna Tomala, Piotr Zrebiec, Daniel L Hartl
Mol Biol Evol. 2019 Sep; 36(9): 1874–1883. Published online 2019 May 6. doi: 10.1093/molbev/msz110
PMCID:
PMC6735812
AbstractArticlePDF–627K
13.
Role of the Carboxylate in Enzyme-Catalyzed Decarboxylation of Orotidine 5′-Monophosphate: Transition State Stabilization Dominates Over Ground State Destabilization
Bogdana Goryanova, Tina L. Amyes, John P. Richard
J Am Chem Soc. 2019 Aug 28; 141(34): 13468–13478. Published online 2019 Jul 31. doi: 10.1021/jacs.9b04823
PMCID:
PMC6735427
AbstractArticlePDF–2.3M
14.
Enzyme Architecture: Breaking Down the Catalytic Cage that Activates Orotidine 5′-Monophosphate Decarboxylase for Catalysis
Archie C. Reyes, David C. Plache, Astrid P. Koudelka, Tina L. Amyes, John A. Gerlt, John P. Richard
J Am Chem Soc. 2018 Dec 19; 140(50): 17580–17590. Published online 2018 Nov 26. doi: 10.1021/jacs.8b09609
PMCID:
PMC6317530
AbstractArticlePDF–1.8M
15.
GC content elevates mutation and recombination rates in the yeast Saccharomyces cerevisiae
Denis A. Kiktev, Ziwei Sheng, Kirill S. Lobachev, Thomas D. Petes
Proc Natl Acad Sci U S A. 2018 Jul 24; 115(30): E7109–E7118. Published online 2018 Jul 9. doi: 10.1073/pnas.1807334115
PMCID:
PMC6064992
AbstractArticlePDF–1.0M
16.
Alternative reactions at the interface of glycolysis and citric acid cycle in Saccharomyces cerevisiae
Harmen M. van Rossum, Barbara U. Kozak, Matthijs S. Niemeijer, Hendrik J. Duine, Marijke A. H. Luttik, Viktor M. Boer, Peter Kötter, Jean-Marc G. Daran, Antonius J. A. van Maris, Jack T. Pronk
FEMS Yeast Res. 2016 May 1; 16(3): fow017. Published online 2016 Feb 18. doi: 10.1093/femsyr/fow017
PMCID:
PMC5815053
AbstractArticlePDF–619K
17.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
18.
Properties of Mitotic and Meiotic Recombination in the Tandemly-Repeated CUP1 Gene Cluster in the Yeast Saccharomyces cerevisiae
Ying Zhao, Margaret Dominska, Aleksandra Petrova, Halle Bagshaw, Robert J. Kokoska, Thomas D. Petes
Genetics. 2017 Jun; 206(2): 785–800. Published online 2017 Apr 3. doi: 10.1534/genetics.117.201285
PMCID:
PMC5499186
AbstractArticlePDF–1.2M
19.
Microhomology-mediated end joining induces hypermutagenesis at breakpoint junctions
Supriya Sinha, Fuyang Li, Diana Villarreal, Jae Hoon Shim, Suhyeon Yoon, Kyungjae Myung, Eun Yong Shim, Sang Eun Lee
PLoS Genet. 2017 Apr; 13(4): e1006714. Published online 2017 Apr 18. doi: 10.1371/journal.pgen.1006714
PMCID:
PMC5413072
AbstractArticlePDF–2.0M
20.
The metabolic background is a global player in Saccharomyces gene expression epistasis
Mohammad Tauqeer Alam, Aleksej Zelezniak, Michael Mülleder, Pavel Shliaha, Roland Schwarz, Floriana Capuano, Jakob Vowinckel, Elahe Radmanesfahar, Antje Krüger, Enrica Calvani, Steve Michel, Stefan Börno, Stefan Christen, Kiran Raosaheb Patil, Bernd Timmermann, Kathryn S Lilley, Markus Ralser
Nat Microbiol. Author manuscript; available in PMC 2016 Dec 1.
Published in final edited form as: Nat Microbiol. 2016 Feb 1; 1: 15030. Published online 2016 Feb 1. doi: 10.1038/nmicrobiol.2015.30
PMCID:
PMC5131842
AbstractArticlePDF–2.0M

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