PMC Links for GEO Profiles (Select 48067313) - PMC

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 95151434.

Phosphorylation of Jhd2 by the Ras-cAMP-PKA(Tpk2) pathway regulates histone modifications and autophagy

Qi Yu, Xuanyunjing Gong, Yue Tong, Min Wang, Kai Duan, Xinyu Zhang, Feng Ge, Xilan Yu, Shanshan Li

Nat Commun. 2022; 13: 5675. Published online 2022 Sep 27. doi: 10.1038/s41467-022-33423-5

PMCID:: PMC9515143

Abstract Article PDF–3.4M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 80351456.

Chromatin regulatory genes differentially interact in networks to facilitate distinct GAL1 activity and noise profiles

David F. Moreno, Murat Acar

Curr Genet. Author manuscript; available in PMC 2022 Apr 1.

Published in final edited form as: Curr Genet. 2021 Apr; 67(2): 267–281. Published online 2020 Nov 7. doi: 10.1007/s00294-020-01124-5

PMCID:: PMC8035145

Abstract Article PDF–1.0M

Select item 79484207.

Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential

Ryan J. Separovich, Mandy W.M. Wong, Tyler R. Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins

J Biol Chem. 2021 Jan-Jun; 296: 100192. Published online 2020 Dec 20. doi: 10.1074/jbc.RA120.015995

PMCID:: PMC7948420

Abstract Article PDF–3.8M

Select item 70107548.

H3K4 methylation at active genes mitigates transcription-replication conflicts during replication stress

Shin Yen Chong, Sam Cutler, Jing-Jer Lin, Cheng-Hung Tsai, Huai-Kuang Tsai, Sue Biggins, Toshio Tsukiyama, Yi-Chen Lo, Cheng-Fu Kao

Nat Commun. 2020; 11: 809. Published online 2020 Feb 10. doi: 10.1038/s41467-020-14595-4

PMCID:: PMC7010754

Abstract Article PDF–5.1M

Select item 66149049.

Tolerance of DNA Replication Stress Is Promoted by Fumarate Through Modulation of Histone Demethylation and Enhancement of Replicative Intermediate Processing in Saccharomyces cerevisiae

Faeze Saatchi, Ann L. Kirchmaier

Genetics. 2019 Jul; 212(3): 631–654. Published online 2019 May 13. doi: 10.1534/genetics.119.302238

PMCID:: PMC6614904

Abstract Article PDF–2.0M

Select item 649933010.

The Set1 complex is dimeric and acts with Jhd2 demethylation to convey symmetrical H3K4 trimethylation

Rupam Choudhury, Sukhdeep Singh, Senthil Arumugam, Assen Roguev, A. Francis Stewart

Genes Dev. 2019 May 1; 33(9-10): 550–564. doi: 10.1101/gad.322222.118

PMCID:: PMC6499330

Abstract Article PDF–12M

Select item 629136611.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 622256912.

Combinatorial Genetic Control of Rpd3S Through Histone H3K4 and H3K36 Methylation in Budding Yeast

Kwan Yin Lee, Mathieu Ranger, Marc D. Meneghini

G3 (Bethesda) 2018 Nov; 8(11): 3411–3420. Published online 2018 Aug 29. doi: 10.1534/g3.118.200589

PMCID:: PMC6222569

Abstract Article PDF–1.8M

Select item 594017213.

H3K4 Methylation Dependent and Independent Chromatin Regulation by JHD2 and SET1 in Budding Yeast

Kwan Yin Lee, Ziyan Chen, River Jiang, Marc D. Meneghini

G3 (Bethesda) 2018 May; 8(5): 1829–1839. Published online 2018 Mar 29. doi: 10.1534/g3.118.200151

PMCID:: PMC5940172

Abstract Article PDF–1.5M

Select item 576535914.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 571449415.

Repression of Middle Sporulation Genes in Saccharomyces cerevisiae by the Sum1-Rfm1-Hst1 Complex Is Maintained by Set1 and H3K4 Methylation

Deepika Jaiswal, Meagan Jezek, Jeremiah Quijote, Joanna Lum, Grace Choi, Rushmie Kulkarni, DoHwan Park, Erin M. Green

G3 (Bethesda) 2017 Dec; 7(12): 3971–3982. Published online 2017 Oct 24. doi: 10.1534/g3.117.300150

PMCID:: PMC5714494

Abstract Article PDF–1.7M

Select item 566188516.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025417.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 547375518.

Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28

Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink

G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317

Correction in:: G3 (Bethesda). 2019 Aug; 9(8): 2787.

PMCID:: PMC5473755

Abstract Article PDF–2.7M

Select item 534570119.

The Saccharomyces cerevisiae Cdk8 Mediator Represses AQY1 Transcription by Inhibiting Set1p-Dependent Histone Methylation

Michael J. Law, Michael A. Finger

G3 (Bethesda) 2017 Mar; 7(3): 1001–1010. Published online 2017 Jan 30. doi: 10.1534/g3.117.039586

PMCID:: PMC5345701

Abstract Article PDF–1.7M

Select item 526245420.

KDM5 lysine demethylases are involved in maintenance of 3′UTR length

Lauren P. Blair, Zongzhi Liu, Ramon Lorenzo D. Labitigan, Lizhen Wu, Dinghai Zheng, Zheng Xia, Erica L. Pearson, Fathima I. Nazeer, Jian Cao, Sabine M. Lang, Rachel J. Rines, Samuel G. Mackintosh, Claire L. Moore, Wei Li, Bin Tian, Alan J. Tackett, Qin Yan

Sci Adv. 2016 Nov; 2(11): e1501662. Published online 2016 Nov 18. doi: 10.1126/sciadv.1501662

PMCID:: PMC5262454

Abstract Article PDF–1.0M

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