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Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105211372.

Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress

Andreas Hadjicharalambous, Alex J. Whale, Geylani Can, J. Mark Skehel, Jonathan M. Houseley, Philip Zegerman

Version 1. Wellcome Open Res. 2023; 8: 327. Published online 2023 Jul 26. doi: 10.12688/wellcomeopenres.19617.1

PMCID:: PMC10521137

Abstract Article PDF–4.0M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 83870235.

Rad53 checkpoint kinase regulation of DNA replication fork rate via Mrc1 phosphorylation

Allison W McClure, John FX Diffley

eLife. 2021; 10: e69726. Published online 2021 Aug 13. doi: 10.7554/eLife.69726

PMCID:: PMC8387023

Abstract Article PDF–4.9M

Select item 80456876.

Interaction of replication factor Sld3 and histone acetyl transferase Esa1 alleviates gene silencing and promotes the activation of late and dormant replication origins

Seiji Tanaka

Genetics. 2021 Jan; 217(1): iyaa001. Published online 2020 Nov 11. doi: 10.1093/genetics/iyaa001

PMCID:: PMC8045687

Abstract Article PDF–873K

Select item 68244637.

Checkpoint inhibition of origin firing prevents DNA topological stress

Esther C. Morafraile, Christine Hänni, George Allen, Theresa Zeisner, Caroline Clarke, Mark C. Johnson, Miguel M. Santos, Lauren Carroll, Nicola E. Minchell, Jonathan Baxter, Peter Banks, Dave Lydall, Philip Zegerman

Genes Dev. 2019 Nov 1; 33(21-22): 1539–1554. doi: 10.1101/gad.328682.119

PMCID:: PMC6824463

Abstract Article PDF–5.0M

Select item 67954778.

The effects of manipulating levels of replication initiation factors on origin firing efficiency in yeast

Kelsey L. Lynch, Gina M. Alvino, Elizabeth X. Kwan, Bonita J. Brewer, M. K. Raghuraman

PLoS Genet. 2019 Oct; 15(10): e1008430. Published online 2019 Oct 4. doi: 10.1371/journal.pgen.1008430

PMCID:: PMC6795477

Abstract Article PDF–5.4M

Select item 63771489.

The Cdk8/19-cyclin C transcription regulator functions in genome replication through metazoan Sld7

Kerstin Köhler, Luis Sanchez-Pulido, Verena Höfer, Anika Marko, Chris P. Ponting, Ambrosius P. Snijders, Regina Feederle, Aloys Schepers, Dominik Boos

PLoS Biol. 2019 Jan; 17(1): e2006767. Published online 2019 Jan 29. doi: 10.1371/journal.pbio.2006767

PMCID:: PMC6377148

Abstract Article PDF–4.1M

Select item 591969710.

An interplay between multiple sirtuins promotes completion of DNA replication in cells with short telomeres

Antoine Simoneau, Étienne Ricard, Hugo Wurtele

PLoS Genet. 2018 Apr; 14(4): e1007356. Published online 2018 Apr 16. doi: 10.1371/journal.pgen.1007356

PMCID:: PMC5919697

Abstract Article PDF–30M

Select item 576535911.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 486983512.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Abstract Article PDF–2.7M

Select item 486476013.

Phosphopeptide binding by Sld3 links Dbf4‐dependent kinase to MCM replicative helicase activation

Tom D Deegan, Joseph TP Yeeles, John FX Diffley

EMBO J. 2016 May 2; 35(9): 961–973. Published online 2016 Feb 24. doi: 10.15252/embj.201593552

PMCID:: PMC4864760

Abstract Article PDF–1.0M

Select item 466639114.

A reconstituted system reveals how activating and inhibitory interactions control DDK dependent assembly of the eukaryotic replicative helicase

M. Carmen Herrera, Silvia Tognetti, Alberto Riera, Juergen Zech, Pippa Clarke, Alejandra Fernández-Cid, Christian Speck

Nucleic Acids Res. 2015 Dec 2; 43(21): 10238–10250. Published online 2015 Sep 3. doi: 10.1093/nar/gkv881

PMCID:: PMC4666391

Abstract Article PDF–7.9M

Select item 398965415.

Prereplicative complexes assembled in vitro support origin-dependent and independent DNA replication

Kin Fan On, Fabienne Beuron, David Frith, Ambrosius P Snijders, Edward P Morris, John F X Diffley

EMBO J. 2014 Mar 18; 33(6): 605–620. Published online 2014 Feb 24. doi: 10.1002/embj.201387369

PMCID:: PMC3989654

Abstract Article PDF–1.4M

Select item 367944916.

Kinetochores Coordinate Pericentromeric Cohesion and Early DNA Replication by Cdc7-Dbf4 Kinase Recruitment

Toyoaki Natsume, Carolin A. Müller, Yuki Katou, Renata Retkute, Marek Gierliński, Hiroyuki Araki, J. Julian Blow, Katsuhiko Shirahige, Conrad A. Nieduszynski, Tomoyuki U. Tanaka

Mol Cell. 2013 Jun 6; 50(5): 661–674. doi: 10.1016/j.molcel.2013.05.011