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Items: 1 to 20 of 23

1.
Allosteric Activation of the ATPase Activity of the Escherichia coli RhlB RNA Helicase
Jonathan A. R. Worrall, Françoise S. Howe, Adam R. McKay, Carol V. Robinson, Ben F. Luisi
J Biol Chem. Author manuscript; available in PMC 2021 Jul 13.
Published in final edited form as: J Biol Chem. 2008 Feb 29; 283(9): 5567–76. Published online 2007 Dec 28. doi: 10.1074/jbc.M708620200
PMCID:
PMC7611231
AbstractArticlePDF–1.6M
2.
Recognition and Cooperation Between the ATP-dependent RNA Helicase RhlB and Ribonuclease RNase E
Vidya Chandran, Leonora Poljak, Nathalie F. Vanzo, Anne Leroy, Ricardo Núñez Miguel, Juan Fernandez-Recio, James Parkinson, Christopher Burns, Agamemnon J. Carpousis, Ben F. Luisi
J Mol Biol. Author manuscript; available in PMC 2021 Jun 16.
Published in final edited form as: J Mol Biol. 2007 Mar 16; 367(1): 113–32. Published online 2006 Dec 12. doi: 10.1016/j.jmb.2006.12.014
PMCID:
PMC7610992
AbstractArticlePDF–3.9M
3.
Analysis of the natively unstructured RNA/protein-recognition core in the Escherichia coli RNA degradosome and its interactions with regulatory RNA/Hfq complexes
Heather A Bruce, Dijun Du, Dijana Matak-Vinkovic, Katarzyna J Bandyra, R William Broadhurst, Esther Martin, Frank Sobott, Alexander V Shkumatov, Ben F Luisi
Nucleic Acids Res. 2018 Jan 9; 46(1): 387–402. Published online 2017 Nov 9. doi: 10.1093/nar/gkx1083
PMCID:
PMC5758883
AbstractArticlePDF–5.8M
4.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
5.
Characterization of the RNA Degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB Interaction in the Gammaproteobacteria
Soraya Aït-Bara, Agamemnon J. Carpousis
J Bacteriol. 2010 Oct; 192(20): 5413–5423. Published online 2010 Aug 20. doi: 10.1128/JB.00592-10
PMCID:
PMC2950506
AbstractArticlePDF–2.0M
6.
The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome
Maria W. Górna, Zbigniew Pietras, Yi-Chun Tsai, Anastasia J. Callaghan, Helena Hernández, Carol V. Robinson, Ben F. Luisi
RNA. 2010 Mar; 16(3): 553–562. doi: 10.1261/rna.1858010
PMCID:
PMC2822920
AbstractArticlePDF–937K
7.
RNaseE and RNA Helicase B Play Central Roles in the Cytoskeletal Organization of the RNA Degradosome
Aziz Taghbalout, Lawrence Rothfield
J Biol Chem. 2008 May 16; 283(20): 13850–13855. doi: 10.1074/jbc.M709118200
PMCID:
PMC2376217
AbstractArticlePDF–314K
8.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
9.
RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton
Aziz Taghbalout, Lawrence Rothfield
Proc Natl Acad Sci U S A. 2007 Jan 30; 104(5): 1667–1672. Published online 2007 Jan 22. doi: 10.1073/pnas.0610491104
PMCID:
PMC1785250
AbstractArticlePDF–387K
10.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
11.
DEAD-box RNA helicases in Escherichia coli
Isabelle Iost, Marc Dreyfus
Nucleic Acids Res. 2006 Sep; 34(15): 4189–4197. Published online 2006 Aug 25. doi: 10.1093/nar/gkl500
PMCID:
PMC1616957
AbstractArticlePDF–294K
12.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
13.
RhlB helicase rather than enolase is the β-subunit of the Escherichia coli polynucleotide phosphorylase (PNPase)–exoribonucleolytic complex
Pei-Hsun Lin, Sue Lin-Chao
Proc Natl Acad Sci U S A. 2005 Nov 15; 102(46): 16590–16595. Published online 2005 Nov 7. doi: 10.1073/pnas.0500994102
PMCID:
PMC1277965
AbstractArticlePDF–474K
14.
Evidence in vivo that the DEAD-box RNA helicase RhlB facilitates the degradation of ribosome-free mRNA by RNase E
Vanessa Khemici, Leonora Poljak, Isabelle Toesca, Agamemnon J. Carpousis
Proc Natl Acad Sci U S A. 2005 May 10; 102(19): 6913–6918. Published online 2005 May 2. doi: 10.1073/pnas.0501129102
PMCID:
PMC1100780
AbstractArticlePDF–366K
15.
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
Jonathan A. Bernstein, Pei-Hsun Lin, Stanley N. Cohen, Sue Lin-Chao
Proc Natl Acad Sci U S A. 2004 Mar 2; 101(9): 2758–2763. Published online 2004 Feb 23. doi: 10.1073/pnas.0308747101
PMCID:
PMC365694
AbstractArticlePDF–416K
16.
Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome
Nathalie F. Vanzo, Yeun Shan Li, Béatrice Py, Erwin Blum, Christopher F. Higgins, Lelia C. Raynal, Henry M. Krisch, Agamemnon J. Carpousis
Genes Dev. 1998 Sep 1; 12(17): 2770–2781. doi: 10.1101/gad.12.17.2770
PMCID:
PMC317140
AbstractArticlePDF–565K
17.
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase
Glen A. Coburn, Xin Miao, Douglas J. Briant, George A. Mackie
Genes Dev. 1999 Oct 1; 13(19): 2594–2603. doi: 10.1101/gad.13.19.2594
PMCID:
PMC317069
AbstractArticlePDF–600K
18.
RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli.
M Kido, K Yamanaka, T Mitani, H Niki, T Ogura, S Hiraga
J Bacteriol. 1996 Jul; 178(13): 3917–3925. doi: 10.1128/jb.178.13.3917-3925.1996
PMCID:
PMC232654
SummaryPDF–537K
19.
New mutation (mmrA1) in Escherichia coli K-12 that affects minimal medium recovery and postreplication repair after UV irradiation.
R C Sharma, N J Sargentini, K C Smith
J Bacteriol. 1983 May; 154(2): 743–747. doi: 10.1128/jb.154.2.743-747.1983
PMCID:
PMC217524
SummaryPage BrowsePDF–638K
20.
Proteins associated with RNase E in a multicomponent ribonucleolytic complex.
A Miczak, V R Kaberdin, C L Wei, S Lin-Chao
Proc Natl Acad Sci U S A. 1996 Apr 30; 93(9): 3865–3869. doi: 10.1073/pnas.93.9.3865
PMCID:
PMC39450
SummaryPage BrowsePDF–1.0M

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