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Select item 57255011.

Identification of regulatory targets for the bacterial Nus factor complex

Gabriele Baniulyte, Navjot Singh, Courtney Benoit, Richard Johnson, Robert Ferguson, Mauricio Paramo, Anne M. Stringer, Ashley Scott, Pascal Lapierre, Joseph T. Wade

Nat Commun. 2017; 8: 2027. Published online 2017 Dec 11. doi: 10.1038/s41467-017-02124-9

PMCID:: PMC5725501

Abstract Article PDF–749K

Select item 54545332.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 46923803.

RNA-structural Mimicry in Escherichia coli Ribosomal Protein L4-dependent Regulation of the S10 Operon

Ulrich Stelzl, Janice M. Zengel, Marina Tovbina, Marquis Walker, Knud H. Nierhaus, Lasse Lindahl, Dinshaw J. Patel

J Biol Chem. Author manuscript; available in PMC 2015 Dec 28.

Published in final edited form as: J Biol Chem. 2003 Jul 25; 278(30): 28237–28245. Published online 2003 May 8. doi: 10.1074/jbc.M302651200

PMCID:: PMC4692380

Abstract Article PDF–1.0M

Select item 46740764.

Regulation of Transcript Elongation

Georgiy A. Belogurov, Irina Artsimovitch

Annu Rev Microbiol. Author manuscript; available in PMC 2016 Oct 15.

Published in final edited form as: Annu Rev Microbiol. 2015 Oct 15; 69: 49–69. Published online 2015 Jun 24. doi: 10.1146/annurev-micro-091014-104047

PMCID:: PMC4674076

Abstract Article PDF–1.2M

Select item 46506575.

Exploring RNA polymerase regulation by NMR spectroscopy

Johanna Drögemüller, Martin Strauß, Kristian Schweimer, Birgitta M. Wöhrl, Stefan H. Knauer, Paul Rösch

Sci Rep. 2015; 5: 10825. Published online 2015 Jun 4. doi: 10.1038/srep10825

PMCID:: PMC4650657

Abstract Article PDF–1.9M

Select item 41610346.

Transcription by Moonlight: Structural Basis of an Extraribosomal Activity of Ribosomal Protein S10

Robert A. Weisberg

Mol Cell. Author manuscript; available in PMC 2014 Sep 11.

Published in final edited form as: Mol Cell. 2008 Dec 26; 32(6): 747–748. doi: 10.1016/j.molcel.2008.12.010

PMCID:: PMC4161034

Abstract Article PDF–286K

Select item 34303737.

An α-helix to β-barrel domain switch transforms the transcription factor RfaH into a translationfactor

Björn M. Burmann, Stefan H. Knauer, Anastasia Sevostyanova, Kristian Schweimer, Rachel A. Mooney, Robert Landick, Irina Artsimovitch, Paul Rösch

Cell. Author manuscript; available in PMC 2013 Jul 20.

Published in final edited form as: Cell. 2012 Jul 20; 150(2): 291–303. doi: 10.1016/j.cell.2012.05.042

PMCID:: PMC3430373

Abstract Article PDF–3.8M

Select item 32853558.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Abstract Article PDF–1.2M

Select item 32058589.

Cross-linking Measurements of In Vivo Protein Complex Topologies

Chunxiang Zheng, Li Yang, Michael R. Hoopmann, Jimmy K. Eng, Xiaoting Tang, Chad R. Weisbrod, James E. Bruce

Mol Cell Proteomics. 2011 Oct; 10(10): M110.006841. Published online 2011 Jun 22. doi: 10.1074/mcp.M110.006841

PMCID:: PMC3205858

Abstract Article PDF–2.4M

Select item 291920910.

Structures of the ribosome in intermediate states of ratcheting

Wen Zhang, Jack Dunkle, Jamie H. D. Cate

Science. Author manuscript; available in PMC 2010 Aug 10.

Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275

PMCID:: PMC2919209

Abstract Article PDF–2.2M

Select item 280020711.

Fine tuning of the E. coli NusB:NusE complex affinity to BoxA RNA is required for processive antitermination

Björn M. Burmann, Xiao Luo, Paul Rösch, Markus C. Wahl, Max E. Gottesman

Nucleic Acids Res. 2010 Jan; 38(1): 314–326. Published online 2009 Oct 23. doi: 10.1093/nar/gkp736

PMCID:: PMC2800207

Abstract Article PDF–4.7M

Select item 277861112.

Regulation of the protein-conducting channel by a bound ribosome

James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten

Structure. Author manuscript; available in PMC 2010 Nov 11.

Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010

PMCID:: PMC2778611

Abstract Article PDF–3.1M

Select item 272079813.

Concurrent Nucleation of 16S Folding and Induced Fit in 30 S Ribosome Assembly

Tadepalli Adilakshmi, Deepti L. Bellur, Sarah A. Woodson

Nature. Author manuscript; available in PMC 2009 Oct 30.

Published in final edited form as: Nature. 2008 Oct 30; 455(7217): 1268–1272. Published online 2008 Sep 10. doi: 10.1038/nature07298

PMCID:: PMC2720798

Abstract Article PDF–1.0M

Select item 262799014.

Structural and Functional Analysis of the E. coli NusB-S10 Transcription Antitermination Complex

Xiao Luo, He-Hsuan Hsiao, Mikhail Bubunenko, Gert Weber, Donald L. Court, Max E. Gottesman, Henning Urlaub, Markus C. Wahl

Mol Cell. Author manuscript; available in PMC 2009 Dec 26.

Published in final edited form as: Mol Cell. 2008 Dec 26; 32(6): 791–802. doi: 10.1016/j.molcel.2008.10.028

PMCID:: PMC2627990

Abstract Article PDF–3.5M

Select item 229217715.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 226701216.

Structural Biophysics of the NusB:NusE Antitermination Complex

Ranabir Das, Sandra Loss, Jess Li, David S. Waugh, Sergey Tarasov, Paul Wingfield, R. Andrew Byrd, Amanda S. Altieri

J Mol Biol. Author manuscript; available in PMC 2009 Feb 22.

Published in final edited form as: J Mol Biol. 2008 Feb 22; 376(3): 705–720. Published online 2007 Nov 17. doi: 10.1016/j.jmb.2007.11.022

PMCID:: PMC2267012

Abstract Article PDF–3.6M

Select item 168148217.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148118.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705219.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405