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Items: 1 to 20 of 24

1.
Hedgehog signalling controls sinoatrial node development and atrioventricular cushion formation
Chaohui Zhang, Yuxin Li, Jiaheng Cao, Beibei Yu, Kaiyue Zhang, Ke Li, Xinhui Xu, Zhikun Guo, Yinming Liang, Xiao Yang, Zhongzhou Yang, Yunfu Sun, Vesa Kaartinen, Keyue Ding, Jikui Wang
Open Biol. 2021 Jun; 11(6): 210020. Published online June 2, 2021. doi: 10.1098/rsob.210020
PMCID:
PMC8169207
AbstractArticlePDF–2.4M
2.
Arid3b Is Critical for B Lymphocyte Development
Jeffrey L. Kurkewich, Nathan Klopfenstein, William M. Hallas, Christian Wood, Rachel A. Sattler, Chhaya Das, Haley Tucker, Richard Dahl, Karen D. Cowden Dahl
PLoS One. 2016; 11(8): e0161468. Published online 2016 Aug 18. doi: 10.1371/journal.pone.0161468
Retraction in:
PLoS One. 2024; 19(8): e0309551.
PMCID:
PMC4990195
AbstractArticle
3.
A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal
Alessia Gagliardi, Nicholas P Mullin, Zi Ying Tan, Douglas Colby, Anastasia I Kousa, Florian Halbritter, Jason T Weiss, Anastasia Felker, Karel Bezstarosti, Rebecca Favaro, Jeroen Demmers, Silvia K Nicolis, Simon R Tomlinson, Raymond A Poot, Ian Chambers
EMBO J. 2013 Aug 14; 32(16): 2231–2247. Published online 2013 Jul 26. doi: 10.1038/emboj.2013.161
PMCID:
PMC3746198
AbstractArticlePDF–2.9M
4.
Epigenetic regulation of the neuroblastoma genes, Arid3b and Mycn
K Kobayashi, L M Jakt, S-I Nishikawa
Oncogene. 2013 May 23; 32(21): 2640–2648. Published online 2012 Jul 2. doi: 10.1038/onc.2012.285
PMCID:
PMC3664305
AbstractArticlePDF–1.3M
5.
Let-7 represses Nr6a1 and a mid-gestation developmental program in adult fibroblasts
Allan M. Gurtan, Arvind Ravi, Peter B. Rahl, Andrew D. Bosson, Courtney K. JnBaptiste, Arjun Bhutkar, Charles A. Whittaker, Richard A. Young, Phillip A. Sharp
Genes Dev. 2013 Apr 15; 27(8): 941–954. doi: 10.1101/gad.215376.113
PMCID:
PMC3650230
AbstractArticlePDF–1.9M
6.
Nanog-dependent function of Tet1 and Tet2 in establishment of pluripotency
Yael Costa, Junjun Ding, Thorold W. Theunissen, Francesco Faiola, Timothy A. Hore, Pavel V. Shliaha, Miguel Fidalgo, Arven Saunders, Moyra Lawrence, Sabine Dietmann, Satyabrata Das, Dana N. Levasseur, Zhe Li, Mingjiang Xu, Wolf Reik, José C.R. Silva, Jianlong Wang
Nature. Author manuscript; available in PMC 2013 Sep 21.
Published in final edited form as: Nature. 2013 Mar 21; 495(7441): 370–374. Published online 2013 Feb 10. doi: 10.1038/nature11925
PMCID:
PMC3606645
AbstractArticlePDF–1.4M
7.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
8.
Oct4 links multiple epigenetic pathways to the pluripotency network
Junjun Ding, Huilei Xu, Francesco Faiola, Avi Ma'ayan, Jianlong Wang
Cell Res. 2012 Jan; 22(1): 155–167. Published online 2011 Nov 15. doi: 10.1038/cr.2011.179
PMCID:
PMC3252465
AbstractArticlePDF–2.7M
9.
Characterization of a new ARID family transcription factor (Brightlike/ARID3C) that co-activates Bright/ARID3A-mediated immunoglobulin gene transcription
Josephine A. Tidwell, Christian Schmidt, Phillip Heaton, Van Wilson, Philip W. Tucker
Mol Immunol. Author manuscript; available in PMC 2012 Oct 1.
Published in final edited form as: Mol Immunol. 2011 Oct; 49(1-2): 260–272. Published online 2011 Sep 28. doi: 10.1016/j.molimm.2011.08.025
PMCID:
PMC3205283
AbstractArticlePDF–2.2M
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
12.
The ARID Family Transcription Factor Bright Is Required for both Hematopoietic Stem Cell and B Lineage Development
Carol F. Webb, James Bryant, Melissa Popowski, Laura Allred, Dongkoon Kim, June Harriss, Christian Schmidt, Cathrine A. Miner, Kira Rose, Hwei-Ling Cheng, Courtney Griffin, Philip W. Tucker
Mol Cell Biol. 2011 Mar; 31(5): 1041–1053. Published online 2011 Jan 3. doi: 10.1128/MCB.01448-10
PMCID:
PMC3067827
AbstractArticlePDF–2.9M
13.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
14.
An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease
Mercedes Pardo, Benjamin Lang, Lu Yu, Haydn Prosser, Allan Bradley, M. Madan Babu, Jyoti Choudhary
Cell Stem Cell. 2010 Apr 2; 6(4): 382–395. doi: 10.1016/j.stem.2010.03.004
PMCID:
PMC2860244
AbstractArticle
15.
An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells
Debbie L.C. van den Berg, Tim Snoek, Nick P. Mullin, Adam Yates, Karel Bezstarosti, Jeroen Demmers, Ian Chambers, Raymond A. Poot
Cell Stem Cell. 2010 Apr 2; 6(4): 369–381. doi: 10.1016/j.stem.2010.02.014
PMCID:
PMC2860243
AbstractArticle
16.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
17.
High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization
Toshiyuki Yoshikawa, Yulan Piao, Jinhui Zhong, Ryo Matoba, Mark G. Carter, Yuxia Wang, Ilya Goldberg, Minoru S.H. Ko
Gene Expr Patterns. Author manuscript; available in PMC 2007 Apr 10.
Published in final edited form as: Gene Expr Patterns. 2006 Jan; 6(2): 213–224. Published online 2005 Dec 1. doi: 10.1016/j.modgep.2005.06.003
PMCID:
PMC1850761
AbstractArticlePDF–1.0M
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Axel Visel, Christina Thaller, Gregor Eichele
Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029
PMCID:
PMC308763
AbstractArticlePDF–253K

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