U.S. flag

An official website of the United States government

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Links from GEO Profiles

Items: 1 to 20 of 35

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Genes and lipids that impact uptake and assimilation of exogenous coenzyme Q in Saccharomyces cerevisiae
Lucía Fernández-del-Río, Miranda Kelly, Jaime Contreras, Michelle C. Bradley, Andrew M. James, Michael P. Murphy, Gregory S. Payne, Catherine F. Clarke
Free Radic Biol Med. Author manuscript; available in PMC 2021 Jul 19.
Published in final edited form as: Free Radic Biol Med. 2020 Jul 1; 154: 105–118. Published online 2020 May 6. doi: 10.1016/j.freeradbiomed.2020.04.029
PMCID:
PMC7611304
AbstractArticlePDF–2.0M
6.
Intragenic suppressor mutations of the COQ8 protein kinase homolog restore coenzyme Q biosynthesis and function in Saccharomyces cerevisiae
Agape M. Awad, Anish Nag, Nguyen V. B. Pham, Michelle C. Bradley, Nour Jabassini, Juan Nathaniel, Catherine F. Clarke
PLoS One. 2020; 15(6): e0234192. Published online 2020 Jun 1. doi: 10.1371/journal.pone.0234192
PMCID:
PMC7263595
AbstractArticlePDF–2.7M
7.
COQ11 deletion mitigates respiratory deficiency caused by mutations in the gene encoding the coenzyme Q chaperone protein Coq10
Michelle C. Bradley, Krista Yang, Lucía Fernández-del-Río, Jennifer Ngo, Anita Ayer, Hui S. Tsui, Noelle Alexa Novales, Roland Stocker, Orian S. Shirihai, Mario H. Barros, Catherine F. Clarke
J Biol Chem. 2020 May 1; 295(18): 6023–6042. Published online 2020 Mar 23. doi: 10.1074/jbc.RA119.012420
PMCID:
PMC7196636
AbstractArticlePDF–4.8M
8.
Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER–mitochondria contacts
Kelly Subramanian, Adam Jochem, Maxence Le Vasseur, Samantha Lewis, Brett R. Paulson, Thiruchelvi R. Reddy, Jason D. Russell, Joshua J. Coon, David J. Pagliarini, Jodi Nunnari
J Cell Biol. 2019 Apr 1; 218(4): 1353–1369. Published online 2019 Jan 23. doi: 10.1083/jcb.201808044
PMCID:
PMC6446851
AbstractArticlePDF–3.1M
9.
Conserved lipid and small molecule modulation of COQ8 reveals regulation of the ancient kinase-like UbiB family
Andrew G. Reidenbach, Zachary A. Kemmerer, Deniz Aydin, Adam Jochem, Molly T. McDevitt, Paul D. Hutchins, Jaime L. Stark, Jonathan A. Stefely, Thiru Reddy, Alex S. Hebert, Emily M. Wilkerson, Isabel E. Johnson, Craig A. Bingman, John L. Markley, Joshua J. Coon, Matteo Dal Peraro, David J. Pagliarini
Cell Chem Biol. Author manuscript; available in PMC 2019 Feb 15.
Published in final edited form as: Cell Chem Biol. 2018 Feb 15; 25(2): 154–165.e11. Published online 2017 Nov 30. doi: 10.1016/j.chembiol.2017.11.001
PMCID:
PMC5819996
AbstractArticlePDF–1.1M
10.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
11.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
12.
Fusion, fission, and transport control asymmetric inheritance of mitochondria and protein aggregates
Stefan Böckler, Xenia Chelius, Nadine Hock, Till Klecker, Madita Wolter, Matthias Weiss, Ralf J. Braun, Benedikt Westermann
J Cell Biol. 2017 Aug 7; 216(8): 2481–2498. doi: 10.1083/jcb.201611197
PMCID:
PMC5551707
AbstractArticlePDF–2.8M
13.
Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase
Xiao Guo, Natalie M. Niemi, Joshua J. Coon, David J. Pagliarini
J Biol Chem. 2017 Jul 14; 292(28): 11751–11759. Published online 2017 May 24. doi: 10.1074/jbc.M117.787341
PMCID:
PMC5512070
AbstractArticlePDF–2.1M
14.
Human COQ9 Rescues a coq9 Yeast Mutant by Enhancing Coenzyme Q Biosynthesis from 4-Hydroxybenzoic Acid and Stabilizing the CoQ-Synthome
Cuiwen H. He, Dylan S. Black, Christopher M. Allan, Brigitte Meunier, Shamima Rahman, Catherine F. Clarke
Front Physiol. 2017; 8: 463. Published online 2017 Jul 7. doi: 10.3389/fphys.2017.00463
PMCID:
PMC5500610
AbstractArticlePDF–1.4M
15.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
16.
Cerebellar Ataxia and Coenzyme Q Deficiency Through Loss of Unorthodox Kinase Activity
Jonathan A. Stefely, Floriana Licitra, Leila Laredj, Andrew G. Reidenbach, Zachary A. Kemmerer, Anais Grangeray, Tiphaine Jaeg-Ehret, Catherine E. Minogue, Arne Ulbrich, Paul D. Hutchins, Emily M. Wilkerson, Zheng Ruan, Deniz Aydin, Alexander S. Hebert, Xiao Guo, Elyse C. Freiberger, Laurence Reutenauer, Adam Jochem, Maya Chergova, Isabel E. Johnson, Danielle C. Lohman, Matthew J. P. Rush, Nicholas W. Kwiecien, Pankaj K. Singh, Anna I. Schlagowski, Brendan J. Floyd, Ulrika Forsman, Pavel J. Sindelar, Michael S. Westphall, Fabien Pierrel, Joffrey Zoll, Matteo Dal Peraro, Natarajan Kannan, Craig A. Bingman, Joshua J. Coon, Philippe Isope, Hélène Puccio, David J. Pagliarini
Mol Cell. Author manuscript; available in PMC 2017 Aug 18.
Published in final edited form as: Mol Cell. 2016 Aug 18; 63(4): 608–620. Published online 2016 Aug 4. doi: 10.1016/j.molcel.2016.06.030
PMCID:
PMC5012427
AbstractArticlePDF–2.2M
17.
AarF Domain Containing Kinase 3 (ADCK3) Mutant Cells Display Signs of Oxidative Stress, Defects in Mitochondrial Homeostasis and Lysosomal Accumulation
Jason K. Cullen, Norazian Abdul Murad, Abrey Yeo, Matthew McKenzie, Micheal Ward, Kok Leong Chong, Nicole L. Schieber, Robert G. Parton, Yi Chieh Lim, Ernst Wolvetang, Ghassan J. Maghzal, Roland Stocker, Martin F. Lavin
PLoS One. 2016; 11(2): e0148213. Published online 2016 Feb 11. doi: 10.1371/journal.pone.0148213
Correction in:
PLoS One. 2016; 11(7): e0160162.
PMCID:
PMC4751082
AbstractArticlePDF–8.2M
18.
Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes
Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker
J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017
PMCID:
PMC4416864
AbstractArticlePDF–3.4M
19.
Identification of Coq11, a New Coenzyme Q Biosynthetic Protein in the CoQ-Synthome in Saccharomyces cerevisiae
Christopher M. Allan, Agape M. Awad, Jarrett S. Johnson, Dyna I. Shirasaki, Charles Wang, Crysten E. Blaby-Haas, Sabeeha S. Merchant, Joseph A. Loo, Catherine F. Clarke
J Biol Chem. 2015 Mar 20; 290(12): 7517–7534. Published online 2015 Jan 28. doi: 10.1074/jbc.M114.633131
PMCID:
PMC4367260
AbstractArticlePDF–5.7M
20.
Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis
Jonathan A. Stefely, Andrew G. Reidenbach, Arne Ulbrich, Krishnadev Oruganty, Brendan J. Floyd, Adam Jochem, Jaclyn M. Saunders, Isabel E. Johnson, Catherine E. Minogue, Russell L. Wrobel, Grant E. Barber, David Lee, Sheng Li, Natarajan Kannan, Joshua J. Coon, Craig A. Bingman, David J. Pagliarini
Mol Cell. Author manuscript; available in PMC 2016 Jan 8.
Published in final edited form as: Mol Cell. 2015 Jan 8; 57(1): 83–94. Published online 2014 Dec 11. doi: 10.1016/j.molcel.2014.11.002
PMCID:
PMC4289473
AbstractArticlePDF–1.6M

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Filter your results:

Find related data

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > Literature > PubMed Central (PMC)
Support Center