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Items: 1 to 20 of 92

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The Intrinsically Disordered N Terminus in Atg12 from Yeast Is Necessary for the Functional Structure of the Protein
Hana Popelka, Vikramjit Lahiri, Wayne D. Hawkins, Felipe da Veiga Leprevost, Alexey I. Nesvizhskii, Daniel J. Klionsky
Int J Mol Sci. 2023 Oct; 24(20): 15036. Published online 2023 Oct 10. doi: 10.3390/ijms242015036
PMCID:
PMC10606595
AbstractArticlePDF–3.6M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The ubiquitin–proteasome system regulates meiotic chromosome organization
Xiao Yang, Meihui Song, Ying Wang, Taicong Tan, Zhongyu Tian, Binyuan Zhai, Xuan Yang, Yingjin Tan, Yanding Cao, Shaojun Dai, Shunxin Wang, Liangran Zhang
Proc Natl Acad Sci U S A. 2022 Apr 26; 119(17): e2106902119. Published online 2022 Apr 19. doi: 10.1073/pnas.2106902119
PMCID:
PMC9169913
AbstractArticlePDF–2.1M
6.
PtdIns4P restriction by hydrolase SAC1 decides specific fusion of autophagosomes with lysosomes
Hongjun Zhang, Jiao Zhou, Peng Xiao, Yong Lin, Xin Gong, Shiyan Liu, Qingjia Xu, Minjin Wang, Haiyan Ren, Mengji Lu, Yuan Wang, Jing Zhu, Zhiping Xie, Huihui Li, Kefeng Lu
Autophagy. 2021; 17(8): 1907–1917. Published online 2020 Jul 30. doi: 10.1080/15548627.2020.1796321
PMCID:
PMC8386628
AbstractArticlePDF–8.5M
7.
Characterization of constitutive ER-phagy of excess membrane proteins
Zhanna Lipatova, Valeriya Gyurkovska, Sarah F. Zhao, Nava Segev
PLoS Genet. 2020 Dec; 16(12): e1009255. Published online 2020 Dec 4. doi: 10.1371/journal.pgen.1009255
PMCID:
PMC7744050
AbstractArticlePDF–4.0M
8.
A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits
Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister
Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030
PMCID:
PMC7721475
AbstractArticle
9.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
10.
Tagging the proteasome active site β5 causes tag specific phenotypes in yeast
Kenrick A. Waite, Alicia Burris, Jeroen Roelofs
Sci Rep. 2020; 10: 18133. Published online 2020 Oct 22. doi: 10.1038/s41598-020-75126-1
PMCID:
PMC7582879
AbstractArticlePDF–1.7M
11.
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone
Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.
Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855
PMCID:
PMC7386433
AbstractArticlePDF–1.0M
12.
TORC1 inactivation stimulates autophagy of nucleoporin and nuclear pore complexes
Yui Tomioka, Tetsuya Kotani, Hiromi Kirisako, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Yoshinori Ohsumi, Hitoshi Nakatogawa
J Cell Biol. 2020 Jul 6; 219(7): e201910063. Published online 2020 May 26. doi: 10.1083/jcb.201910063
PMCID:
PMC7337488
AbstractArticlePDF–4.0M
13.
DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae
Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue
Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622
PMCID:
PMC7138222
AbstractArticlePDF–8.0M
14.
ESCRT machinery mediates selective microautophagy of endoplasmic reticulum in yeast
Jasmin A Schäfer, Julia P Schessner, Peter W Bircham, Takuma Tsuji, Charlotta Funaya, Oliver Pajonk, Katharina Schaeff, Giulia Ruffini, Dimitrios Papagiannidis, Michael Knop, Toyoshi Fujimoto, Sebastian Schuck
EMBO J. 2020 Jan 15; 39(2): e102586. Published online 2019 Dec 5. doi: 10.15252/embj.2019102586
PMCID:
PMC6960443
AbstractArticlePDF–4.0M
15.
ATG8-binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors
Richard S. Marshall, Zhihua Hua, Sujina Mali, Fionn McLoughlin, Richard D. Vierstra
Cell. Author manuscript; available in PMC 2020 Apr 18.
Published in final edited form as: Cell. 2019 Apr 18; 177(3): 766–781.e24. Published online 2019 Apr 4. doi: 10.1016/j.cell.2019.02.009
PMCID:
PMC6810650
AbstractArticlePDF–3.6M
16.
Role of Atg8 in the regulation of vacuolar membrane invagination
Ayane Ishii, Kazuo Kurokawa, Miyuu Hotta, Suzuka Yoshizaki, Maki Kurita, Aya Koyama, Akihiko Nakano, Yoko Kimura
Sci Rep. 2019; 9: 14828. Published online 2019 Oct 15. doi: 10.1038/s41598-019-51254-1
PMCID:
PMC6794316
AbstractArticlePDF–2.1M
17.
A switch element in the autophagy E2 Atg3 mediates allosteric regulation across the lipidation cascade
Yumei Zheng, Yu Qiu, Christy R. R. Grace, Xu Liu, Daniel J. Klionsky, Brenda A. Schulman
Nat Commun. 2019; 10: 3600. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11435-y
PMCID:
PMC6689050
AbstractArticlePDF–3.9M
18.
Analysis of autophagy activated during changes in carbon source availability in yeast cells
Ryo Iwama, Yoshinori Ohsumi
J Biol Chem. 2019 Apr 5; 294(14): 5590–5603. Published online 2019 Feb 12. doi: 10.1074/jbc.RA118.005698
PMCID:
PMC6462502
AbstractArticlePDF–4.4M
19.
Follicular lymphoma–associated mutations in vacuolar ATPase ATP6V1B2 activate autophagic flux and mTOR
Fangyang Wang, Damián Gatica, Zhang Xiao Ying, Luke F. Peterson, Peter Kim, Denzil Bernard, Kamlai Saiya-Cork, Shaomeng Wang, Mark S. Kaminski, Alfred E. Chang, Tycel Phillips, Daniel J. Klionsky, Sami N. Malek
J Clin Invest. 2019 Apr 1; 129(4): 1626–1640. Published online 2019 Mar 4. doi: 10.1172/JCI98288
PMCID:
PMC6436860
AbstractArticlePDF–5.4M
20.
The Pat1-Lsm complex stabilizes ATG mRNA during nitrogen starvation-induced autophagy
Damián Gatica, Guowu Hu, Xu Liu, Nannan Zhang, Peter R. Williamson, Daniel J. Klionsky
Mol Cell. Author manuscript; available in PMC 2020 Jan 17.
Published in final edited form as: Mol Cell. 2019 Jan 17; 73(2): 314–324.e4. Published online 2018 Dec 6. doi: 10.1016/j.molcel.2018.11.002
PMCID:
PMC6338489
AbstractArticlePDF–2.2M

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