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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 102266194.

The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module

Sara T. Haile, Sanim Rahman, James K. Fields, Benjamin C. Orsburn, Namandjé N. Bumpus, Cynthia Wolberger

Biochim Biophys Acta Gene Regul Mech. Author manuscript; available in PMC 2023 Jun 1.

Published in final edited form as: Biochim Biophys Acta Gene Regul Mech. 2023 Jun; 1866(2): 194929. Published online 2023 Mar 24. doi: 10.1016/j.bbagrm.2023.194929

PMCID:: PMC10226619

Abstract Article PDF–1.8M

Select item 98363485.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 97134396.

Involvement of the SAGA and TFIID coactivator complexes in transcriptional dysregulation caused by the separation of core and tail Mediator modules

Moustafa M Saleh, Heather A Hundley, Gabriel E Zentner

G3 (Bethesda) 2022 Dec; 12(12): jkac290. Published online 2022 Nov 4. doi: 10.1093/g3journal/jkac290

PMCID:: PMC9713439

Abstract Article PDF–866K

Select item 92966737.

Conformational landscape of the yeast SAGA complex as revealed by cryo-EM

Diana Vasyliuk, Joeseph Felt, Ellen D. Zhong, Bonnie Berger, Joseph H. Davis, Calvin K. Yip

Sci Rep. 2022; 12: 12306. Published online 2022 Jul 19. doi: 10.1038/s41598-022-16391-0

PMCID:: PMC9296673

Abstract Article PDF–3.9M

Select item 92860238.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098119.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 857106310.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 813191511.

SAGA and SAGA-like SLIK transcriptional coactivators are structurally and biochemically equivalent

Klaudia Adamus, Cyril Reboul, Jarrod Voss, Cheng Huang, Ralf B. Schittenhelm, Sarah N. Le, Andrew M. Ellisdon, Hans Elmlund, Marion Boudes, Dominika Elmlund

J Biol Chem. 2021 Jan-Jun; 296: 100671. Published online 2021 Apr 15. doi: 10.1016/j.jbc.2021.100671

PMCID:: PMC8131915

Abstract Article PDF–2.0M

Select item 759445512.

SAGA–CORE subunit Spt7 is required for correct Ubp8 localization, chromatin association and deubiquitinase activity

Carme Nuño-Cabanes, Varinia García-Molinero, Manuel Martín-Expósito, María-Eugenia Gas, Paula Oliete-Calvo, Encar García-Oliver, María de la Iglesia-Vayá, Susana Rodríguez-Navarro

Epigenetics Chromatin. 2020; 13: 46. Published online 2020 Oct 28. doi: 10.1186/s13072-020-00367-3

PMCID:: PMC7594455

Abstract Article PDF–1.9M

Select item 728984813.

Cell size sets the diameter of the budding yeast contractile ring

I. V. Kukhtevich, N. Lohrberg, F. Padovani, R. Schneider, K. M. Schmoller

Nat Commun. 2020; 11: 2952. Published online 2020 Jun 11. doi: 10.1038/s41467-020-16764-x

PMCID:: PMC7289848

Abstract Article PDF–5.6M

Select item 727317714.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 699425915.

Structure of transcription coactivator SAGA

Haibo Wang, Christian Dienemann, Alexandra Stützer, Henning Urlaub, Alan C.M. Cheung, Patrick Cramer

Nature. Author manuscript; available in PMC 2020 Jul 22.

Published in final edited form as: Nature. 2020 Jan; 577(7792): 717–720. Published online 2020 Jan 22. doi: 10.1038/s41586-020-1933-5

PMCID:: PMC6994259

Abstract Article PDF–4.1M

Select item 697796816.

Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA

Rafal Donczew, Linda Warfield, Derek Pacheco, Ariel Erijman, Steven Hahn

eLife. 2020; 9: e50109. Published online 2020 Jan 8. doi: 10.7554/eLife.50109

PMCID:: PMC6977968

Abstract Article PDF–3.0M

Select item 686823617.

Chaperone-mediated ordered assembly of the SAGA and NuA4 transcription co-activator complexes in yeast

Alberto Elías-Villalobos, Damien Toullec, Céline Faux, Martial Séveno, Dominique Helmlinger

Nat Commun. 2019; 10: 5237. Published online 2019 Nov 20. doi: 10.1038/s41467-019-13243-w

PMCID:: PMC6868236

Abstract Article PDF–3.9M

Select item 661338118.

The role of transcription factors and nuclear pore proteins in controlling the spatial organization of the yeast genome.

Donna Garvey Brickner, Carlo Randise-Hinchliff, Marine Lebrun Corbin, Julie Ming Liang, Stephanie Kim, Bethany Sump, Agustina D’Urso, Seo Hyun Kim, Atsushi Satomura, Heidi Schmit, Robert Coukos, Subin Hwang, Raven Watson, Jason H. Brickner

Dev Cell. Author manuscript; available in PMC 2020 Jun 17.

Published in final edited form as: Dev Cell. 2019 Jun 17; 49(6): 936–947.e4. doi: 10.1016/j.devcel.2019.05.023