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Select item 109544481.

Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars

Vladimir Mindel, Sagie Brodsky, Aileen Cohen, Wajd Manadre, Felix Jonas, Miri Carmi, Naama Barkai

Nucleic Acids Res. 2024 Mar 21; 52(5): 2260–2272. Published online 2023 Dec 18. doi: 10.1093/nar/gkad1191

PMCID:: PMC10954448

Abstract Article PDF–2.4M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105700364.

Yeast transcription factor Msn2 binds to G4 DNA

Duong Long Duy, Nayun Kim

Nucleic Acids Res. 2023 Oct 13; 51(18): 9643–9657. Published online 2023 Aug 24. doi: 10.1093/nar/gkad684

PMCID:: PMC10570036

Abstract Article PDF–2.1M

Select item 102502225.

The molecular grammar of protein disorder guiding genome-binding locations

Felix Jonas, Miri Carmi, Beniamin Krupkin, Joseph Steinberger, Sagie Brodsky, Tamar Jana, Naama Barkai

Nucleic Acids Res. 2023 Jun 9; 51(10): 4831–4844. Published online 2023 Mar 20. doi: 10.1093/nar/gkad184

PMCID:: PMC10250222

Abstract Article PDF–1.9M

Select item 98363486.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 97441857.

Nutrient Signaling, Stress Response, and Inter-organelle Communication Are Non-canonical Determinants of Cell Fate

N. Ezgi Wood, Piya Kositangool, Hanaa Hariri, Ashley J. Marchand, W. Mike Henne

Cell Rep. Author manuscript; available in PMC 2022 Dec 12.

Published in final edited form as: Cell Rep. 2020 Dec 1; 33(9): 108446. doi: 10.1016/j.celrep.2020.108446

PMCID:: PMC9744185

Abstract Article PDF–3.2M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89180429.

Stress response factors drive regrowth of quiescent cells

Zheng Kuang, Hongkai Ji, Jef D. Boeke

Curr Genet. Author manuscript; available in PMC 2022 Mar 13.

Published in final edited form as: Curr Genet. 2018 Aug; 64(4): 807–810. Published online 2018 Feb 17. doi: 10.1007/s00294-018-0813-0

PMCID:: PMC8918042

Abstract Article PDF–143K

Select item 859420410.

HSF1 induces RNA polymerase II synthesis of ribosomal RNA in S. cerevisiae during nitrogen deprivation

Arjuna Rao Vallabhaneni, Merita Kabashi, Matt Haymowicz, Kushal Bhatt, Violet Wayman, Shazia Ahmed, Heather Conrad-Webb

Curr Genet. 2021; 67(6): 937–951. Published online 2021 Aug 6. doi: 10.1007/s00294-021-01197-w

PMCID:: PMC8594204

Abstract Article PDF–1.3M

Select item 848195011.

A Bacterial Quorum Sensing Molecule Elicits a General Stress Response in Saccharomyces cerevisiae

Antonia Delago, Rachel Gregor, Luba Dubinsky, Rambabu Dandela, Adi Hendler, Pnina Krief, Josep Rayo, Amir Aharoni, Michael M. Meijler

Front Microbiol. 2021; 12: 632658. Published online 2021 Sep 16. doi: 10.3389/fmicb.2021.632658

PMCID:: PMC8481950

Abstract Article PDF–756K

Select item 828138712.

Ligation of newly replicated DNA controls the timing of DNA mismatch repair

Gloria X. Reyes, Anna Kolodziejczak, Lovely Jael Paul Solomon Devakumar, Takashi Kubota, Richard D. Kolodner, Christopher D. Putnam, Hans Hombauer

Curr Biol. Author manuscript; available in PMC 2021 Jul 15.

Published in final edited form as: Curr Biol. 2021 Mar 22; 31(6): 1268–1276.e6. Published online 2021 Jan 7. doi: 10.1016/j.cub.2020.12.018

PMCID:: PMC8281387

Abstract Article PDF–1.5M

Select item 821475913.

Genome-wide imaging screen uncovers molecular determinants of arsenite-induced protein aggregation and toxicity

Stefanie Andersson, Antonia Romero, Joana Isabel Rodrigues, Sansan Hua, Xinxin Hao, Therese Jacobson, Vivien Karl, Nathalie Becker, Arghavan Ashouri, Sebastien Rauch, Thomas Nyström, Beidong Liu, Markus J. Tamás

J Cell Sci. 2021 Jun 1; 134(11): jcs258338. Published online 2021 Jun 4. doi: 10.1242/jcs.258338